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BioLiP
>protein
MTPIIHLKGDRNSLKCLRYRLRKHSDHYRDISSTWHWTKTGILTVTYHSETQRTKFLNTVAIPDSVQILVGYMT

The query sequence (length=74) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1jj4:B 76 75 1.0000 0.9737 0.9867 2.17e-49 1jj4:A
2 2ayb:A 87 80 0.5405 0.4598 0.5000 5.66e-22 2ayb:B, 2ayg:A, 2ayg:B
3 2bop:A 85 71 0.2703 0.2353 0.2817 3.48e-05
4 4xdy:A 331 26 0.1486 0.0332 0.4231 0.26 4xdy:B
5 8him:B 971 21 0.1216 0.0093 0.4286 3.4
6 4n2z:A 318 14 0.1081 0.0252 0.5714 5.3
7 6kbn:C 504 30 0.1622 0.0238 0.4000 6.0 6kbm:A, 6kbn:A
8 7ajt:UA 834 38 0.1892 0.0168 0.3684 6.8 7d5s:B1, 6ke6:B1, 6lqp:B1, 6lqq:B1, 6lqu:B1, 6nd4:O, 7suk:LO, 5wlc:LO, 6zqa:UA, 6zqb:UA, 6zqc:UA
9 6uke:X 258 47 0.1757 0.0504 0.2766 6.9 6ukf:X, 6ukg:X, 6ukh:X, 6uki:X, 6uki:Y
10 6lqs:B1 806 38 0.1892 0.0174 0.3684 7.2 7aju:UA, 7d4i:B1, 7d5t:B1, 7d63:B1, 6lqr:B1, 6lqt:B1, 6lqv:B1, 6zqd:UA, 6zqe:UA, 6zqf:UA
11 4o4e:A 246 41 0.2027 0.0610 0.3659 8.4 4o4d:A, 4o4f:A, 8omi:A
12 5fg3:A 598 54 0.2027 0.0251 0.2778 9.2 5yt0:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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