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BioLiP
>protein
MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHF
KPGKELRDRANIYG

The query sequence (length=94) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1ihf:B 94 94 1.0000 1.0000 1.0000 7.17e-67 2ht0:B, 5j0n:J, 5j0n:L, 1ouz:B, 1owf:B, 1owg:B, 5wfe:L
2 8flj:F 94 91 0.7128 0.7128 0.7363 1.70e-46 8flj:H
3 2iie:A 204 55 0.5851 0.2696 1.0000 4.79e-36 2ht0:A, 1ihf:A, 2iif:A, 5j0n:I, 5j0n:K, 1ouz:A, 1owf:A, 1owg:A, 5wfe:K
4 4qju:A 90 88 0.3723 0.3889 0.3977 5.63e-20 4qju:B
5 6o8q:B 91 88 0.3191 0.3297 0.3409 5.34e-17 6o8q:G, 6o8q:H, 6o8q:F, 4yf0:B, 4yfh:B
6 1p71:A 94 89 0.3191 0.3191 0.3371 3.66e-14 1p51:A, 1p51:B, 1p51:D, 1p51:C, 1p71:B, 1p78:A, 1p78:B
7 8flj:G 98 94 0.3191 0.3061 0.3191 6.30e-14 8flj:E
8 2np2:A 102 95 0.3085 0.2843 0.3053 7.36e-13 2np2:B
9 4dky:B 101 87 0.3191 0.2970 0.3448 7.19e-09
10 6oaj:B 79 88 0.2553 0.3038 0.2727 6.58e-08 6o6k:A, 6o8q:A, 6o8q:I, 6oaj:C, 4yey:C, 4yf0:A, 4yfh:A
11 8ova:AQ 100 40 0.1596 0.1500 0.3750 0.29 8ove:AQ
12 6knb:B 1120 67 0.2021 0.0170 0.2836 0.64 6knc:B
13 3ula:A 276 33 0.1064 0.0362 0.3030 0.79 3ula:C
14 6lmj:A 99 70 0.2021 0.1919 0.2714 1.6 6lmj:B
15 4g8a:B 605 33 0.1064 0.0165 0.3030 2.0 4g8a:A
16 6yxx:EM 308 44 0.1489 0.0455 0.3182 2.6
17 1lbg:A 357 59 0.1915 0.0504 0.3051 3.1 2bjc:A, 2bjc:B, 1cjg:A, 1cjg:B, 1efa:A, 1efa:B, 1efa:C, 1jwl:B, 1jwl:A, 1jwl:C, 2kei:A, 2kei:B, 2kej:A, 2kej:B, 2kek:A, 2kek:B, 1l1m:A, 1l1m:B, 1lbg:D, 1lbh:A, 1lbh:B, 1lbh:C, 1lbh:D, 1lcc:A, 1lcd:A, 1osl:A, 1osl:B, 2p9h:A, 2p9h:B, 2paf:A, 2paf:B, 2pe5:A, 2pe5:B, 2pe5:C, 4rzt:A, 4rzt:B, 4rzt:C, 4rzt:D, 1tlf:A, 1tlf:B, 1tlf:C, 1tlf:D
18 6yxy:EM 330 44 0.1489 0.0424 0.3182 3.5
19 6lzj:A 245 53 0.1809 0.0694 0.3208 4.2 6lzi:A
20 7e2i:D 907 41 0.1489 0.0154 0.3415 6.0 7e2g:D, 7e2h:E
21 1vr0:C 237 34 0.1383 0.0549 0.3824 7.1 1vr0:A, 1vr0:B
22 5xy3:O 196 58 0.1489 0.0714 0.2414 7.8
23 8glw:A 483 52 0.1702 0.0331 0.3077 9.6 8glu:G, 8glu:F, 8glu:E, 8glw:E, 8glw:F, 8glw:B, 8glw:C, 8glw:D, 8glw:G, 8glx:F, 8glx:B, 8glx:G, 8glx:E, 8glx:C, 8glx:A, 7mbw:A, 7mbw:B, 7mbw:C, 7mbw:D, 7mcs:A, 7mcs:D, 7mcs:B, 7mcs:C, 7mcs:E, 7mcs:F, 8vcj:B, 8vcj:F, 8vcj:C, 8vcj:A, 8vcj:D, 8vcj:E, 8vcj:G, 8vct:C, 8vct:B, 8vct:G, 8vct:E, 8vct:F, 8vct:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218