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BioLiP
>protein
MTKQEKTALNMARFIRSQTLTLLEKLNELDADEQADICESLHDHADELYRSCLASFKKNGQIDEQADICESLHDHADELY
RSCLARFGGSKQEKTALNMARFIRSQTLTLLEKLNELAKG

The query sequence (length=120) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1yo7:A 120 120 1.0000 1.0000 1.0000 4.70e-85 1yo7:B
2 1f4n:A 59 55 0.3750 0.7627 0.8182 6.16e-27 1f4m:A, 1f4m:C, 1f4m:E, 1f4n:B
3 1f4n:A 59 29 0.2000 0.4068 0.8276 2.55e-10 1f4m:A, 1f4m:C, 1f4m:E, 1f4n:B
4 2vma:A 122 48 0.1417 0.1393 0.3542 0.20 3c1q:A, 3c1q:B, 2vma:B, 2vmb:A, 2vmb:B
5 6tz6:A 361 18 0.0833 0.0277 0.5556 1.5 6tz6:D
6 6tz6:A 361 18 0.0750 0.0249 0.5000 6.8 6tz6:D
7 2wb9:A 210 61 0.1500 0.0857 0.2951 4.2 2wb9:B, 2wdu:A, 2wdu:B
8 7cb8:A 394 38 0.1167 0.0355 0.3684 4.8 7cb8:B
9 1jmt:A 98 61 0.1500 0.1837 0.2951 5.2
10 7chj:B 226 22 0.0917 0.0487 0.5000 5.6 7chj:A, 6s0p:A, 6s7e:A
11 5kzd:A 284 19 0.0750 0.0317 0.4737 6.6 5kzd:B, 5kzd:C, 5kzd:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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