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BioLiP
>protein
MTKNQALRAALDSGRLFTAMAAHNPLVAKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTVSIPLIA
DIDTGFGNAVNVHYVVPQYEAAGASAIVMEDKTFPKDTQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLGQQE
AVRRGQAYEEAGADAILIHSRQKTPDEILAFVKSWPGKVPLVLVPTAYPQLTEADIAALSKVGIVIYGNHAIRAAVGAVR
EVFARIRRDGGIREVDAALPSVKEIIELQGDERMRAVEARYLK

The query sequence (length=283) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2dua:A 283 283 1.0000 1.0000 1.0000 0.0 2hjp:A
2 5unc:A 289 283 0.4452 0.4360 0.4452 4.95e-74 5unc:B, 5unc:C, 5unc:D
3 1m1b:A 291 289 0.4099 0.3986 0.4014 2.29e-69 1m1b:B, 1pym:A, 1pym:B
4 3b8i:A 284 252 0.3004 0.2993 0.3373 5.32e-29 3b8i:B, 3b8i:C, 3b8i:D, 3b8i:E, 3b8i:F
5 6t4v:C 277 262 0.3180 0.3249 0.3435 3.27e-26 6t4v:A, 6t4v:B, 6t4v:D, 6t5m:C, 6t5m:A, 6t5m:D, 6t5m:B
6 1mum:A 289 277 0.3074 0.3010 0.3141 5.35e-22 1o5q:A, 1o5q:B, 1o5q:C, 1o5q:D, 1xg3:A, 1xg3:B, 1xg3:C, 1xg3:D
7 4iqd:A 290 269 0.2650 0.2586 0.2788 5.52e-21 4iqd:B
8 3fa3:B 302 264 0.2792 0.2616 0.2992 2.66e-17 3fa3:A, 3fa3:C, 3fa3:D, 3fa3:E, 3fa3:F, 3fa3:G, 3fa3:H, 3fa3:I, 3fa3:J, 3fa3:K, 3fa3:L, 3fa3:M, 3fa3:N, 3fa3:O, 3fa3:P, 3fa4:A, 3fa4:B, 3fa4:C, 3fa4:D, 3fa4:E, 3fa4:F, 3fa4:G, 3fa4:H, 3fa4:I, 3fa4:J, 3fa4:K, 3fa4:L
9 3m0j:A 297 278 0.2756 0.2626 0.2806 1.80e-16 3lye:A, 3m0k:A
10 1zlp:B 285 162 0.2014 0.2000 0.3519 5.02e-14 1zlp:A
11 2ze3:A 275 216 0.2226 0.2291 0.2917 5.63e-11
12 6g1o:A 486 99 0.1237 0.0720 0.3535 3.55e-05
13 6lrt:A 423 102 0.0848 0.0567 0.2353 0.032 6lrt:D, 6lrt:G, 6lrt:J, 6lrt:M, 6lrt:P, 6lrt:S, 6lrt:V
14 5e9f:D 453 83 0.1060 0.0662 0.3614 0.12
15 5e9f:B 501 83 0.1060 0.0599 0.3614 0.13 5e9f:C, 5e9g:C
16 7rbx:C 425 221 0.1696 0.1129 0.2172 0.14 7rbx:A, 7rbx:B, 7rbx:D
17 7cmy:C 417 102 0.0848 0.0576 0.2353 0.16
18 1igw:A 396 161 0.1519 0.1086 0.2671 0.64
19 6c4a:A 428 168 0.1555 0.1028 0.2619 0.89 6c4a:B, 6c4a:C, 6c4a:D, 6c4a:E, 6c4a:F, 6c4a:G, 6c4a:H, 6c4c:A, 6c4c:B, 6c4c:C, 6c4c:D, 6c4c:E, 6c4c:F, 6c4c:G, 6c4c:H, 7cp1:A, 7cp1:B, 5dql:A, 5dql:B, 5dql:C, 5dql:D, 1f61:A, 1f61:B, 1f8i:A, 1f8i:B, 1f8i:C, 1f8i:D, 1f8m:A, 1f8m:B, 1f8m:C, 1f8m:D, 7rb1:A, 7rb1:B, 7rb1:C, 7rb1:D, 6vb9:A, 6vb9:B, 6vb9:C, 6vb9:D, 6wsi:A, 6wsi:B, 6wsi:C, 6wsi:D, 6xpp:A, 6xpp:B, 6xpp:C, 6xpp:D
20 6gau:A 1088 149 0.1237 0.0322 0.2349 1.2 5bs8:A, 5bs8:B, 5bs8:C, 5bs8:D, 5bta:A, 5bta:B, 5bta:C, 5bta:D, 5btc:A, 5btc:B, 5btc:C, 5btc:D, 5btd:A, 5btd:B, 5btd:C, 5btd:D, 5btf:A, 5btf:B, 5btf:C, 5btf:D, 5btg:A, 5btg:B, 5btg:C, 5btg:D, 5bti:A, 5bti:B, 5bti:C, 5bti:D, 5btl:A, 5btl:B, 5btl:C, 5btl:D, 5btn:A, 5btn:B, 5btn:C, 5btn:D, 9foy:A, 9foy:B, 6gau:B, 7ugw:A, 7ugw:B, 7ugw:C, 7ugw:D
21 1igw:C 416 37 0.0459 0.0312 0.3514 1.3 1igw:B, 1igw:D
22 8z1r:B 516 79 0.0813 0.0446 0.2911 1.5 8z1r:A
23 6edz:C 723 96 0.0954 0.0373 0.2812 2.1
24 3lee:F 262 73 0.0707 0.0763 0.2740 2.3
25 8adl:A 633 56 0.0777 0.0348 0.3929 2.8 8adl:I
26 8s8f:m 77 19 0.0353 0.1299 0.5263 3.1 8s8i:m
27 5e9h:A 518 89 0.1025 0.0560 0.3258 3.2
28 4lsb:B 278 238 0.2473 0.2518 0.2941 5.3 4lsb:A
29 5e9g:B 525 89 0.1060 0.0571 0.3371 5.6 5e9f:A, 5e9g:A
30 5e9g:D 486 89 0.1060 0.0617 0.3371 5.6
31 4rle:A 116 25 0.0424 0.1034 0.4800 5.9
32 3szy:A 413 125 0.1237 0.0847 0.2800 6.2 3szz:A, 3t00:A, 3t01:A, 3t02:A
33 4zfv:A 436 30 0.0495 0.0321 0.4667 6.9 5bsb:A, 5bvc:A, 5tkr:A, 4yh5:A, 4yh5:B, 4zfv:B, 4zlu:A, 4zlu:B
34 6gsm:m 96 19 0.0353 0.1042 0.5263 7.1 8cah:m, 6gsn:m, 3j80:j, 3j81:m, 3jam:j, 3jap:m, 4uer:F, 6zce:m
35 6ywe:U 138 78 0.0777 0.1594 0.2821 7.6 6yws:U, 6ywv:U, 6ywx:U, 6ywy:U
36 6mgr:C 369 139 0.1272 0.0976 0.2590 7.7 6mgr:A, 6mgr:B, 6mgr:D, 4mz1:A, 4mz1:B, 4mz1:C, 4mz8:A, 4mz8:B, 4mz8:C, 4mz8:D, 4r7j:A, 5uqf:A, 5uqf:B, 5uqf:C, 5uqg:A, 5uqg:B, 5uqg:H, 5uqg:C, 5uqg:G, 5uqg:D, 5uqg:E, 5uqg:F, 5uqh:A, 5uqh:B, 5uqh:C, 5uqh:D, 5uqh:E, 5uqh:F, 5uqh:G, 5uqh:H, 5urq:A, 5urq:D, 5urq:B, 5urq:C, 5urq:E, 5urq:H, 5urq:F, 5urq:G
37 2d7d:A 621 127 0.1201 0.0548 0.2677 9.4 2nmv:A, 3v4r:B, 3v4r:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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