Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MTERTLKVLSPLHIGTGNELTPVDIYPRENIIHVLDTERAAAAAAAAGAAAAAAAAGAAAAAAGAAAAAAAAAAAAAAAA
AAAAGAAGRKSMQIKEFIKLNGRPYIPGSSLKGAIRTAVLYKALKECGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAGAAAAAAAAIRYEPKRDPMKALIVRDSKPVGRKHLAVYHVEVIGNPQPIPIWVEAIEPGAATDVEIHVDTEALRLNAD
YFNGLLWECLKERGEPGEVFEDFLWEAVDEFYTAVMKYETIEVQKFSQVRSFYASLEDHSGHVLRLGWGSGWLAMTIGLL
LVEKGYKWENVRKKLGLGKKREFPKTRRLADGMPMGWVVLE

The query sequence (length=361) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6o7e:Y 361 361 1.0000 1.0000 1.0000 0.0 6o7h:F, 6o7i:F
2 6mur:F 377 377 0.7701 0.7374 0.7374 0.0 6iqw:F, 6mus:F, 6mut:F
3 6muu:F 323 361 0.6787 0.7585 0.6787 5.74e-165
4 9ash:J 311 238 0.1440 0.1672 0.2185 1.01e-05 9asi:J, 6xn3:J, 6xn4:J, 6xn5:J, 6xn7:J
5 8wfx:N 265 128 0.0997 0.1358 0.2812 1.11e-05
6 8x5d:N 370 252 0.1496 0.1459 0.2143 8.42e-05
7 6ifr:H 353 268 0.1717 0.1756 0.2313 1.11e-04 6ifk:H, 6ifl:H, 6ifn:H, 6ifu:H, 6ify:H, 6ifz:H, 6ig0:H
8 8do6:H 327 249 0.1163 0.1284 0.1687 0.013 7uzz:E, 7v00:E, 7v01:E, 7v02:E
9 8bmw:F 239 22 0.0416 0.0628 0.6818 0.096 8bmw:G
10 6mur:D 287 16 0.0332 0.0418 0.7500 1.4 6iqw:C, 6iqw:D, 6mur:C, 6mus:C, 6mus:D, 6mus:K, 6mut:C, 6mut:D, 6muu:C, 6muu:D, 6o7e:C, 6o7e:D, 6o7h:C, 6o7h:D, 6o7i:C, 6o7i:D, 6o7i:K
11 3dm5:A 416 53 0.0499 0.0433 0.3396 4.1 3dm5:B
12 8gna:A 1188 35 0.0443 0.0135 0.4571 4.9
13 7y80:A 1218 35 0.0443 0.0131 0.4571 5.0 8gu6:A
14 7y84:A 1242 35 0.0443 0.0129 0.4571 5.0 7x7a:A, 7x7r:A, 7xc7:A, 7y83:A, 7y85:A
15 8d8n:B 1256 35 0.0443 0.0127 0.4571 5.0 8d9e:B, 8d9i:B, 7y81:A
16 7xss:B 1282 35 0.0443 0.0125 0.4571 5.0 8d9f:B, 8d9h:B, 7x8a:A, 7xso:A, 7xsp:B, 7xt4:B
17 7y8t:A 1298 35 0.0443 0.0123 0.4571 5.0 8d9g:B, 7xsq:A, 7xsr:B, 7y8y:A
18 7y82:A 1341 35 0.0443 0.0119 0.4571 5.0
19 8d97:A 1600 35 0.0443 0.0100 0.4571 5.1
20 6ifn:F 220 16 0.0305 0.0500 0.6875 5.2 6ifk:G, 6ifk:F, 6ifk:E, 6ifl:D, 6ifl:E, 6ifl:F, 6ifn:E, 6ifn:G, 6ifr:G, 6ifr:F, 6ifr:E, 6ifu:D, 6ifu:E, 6ifu:F, 6ify:G, 6ify:F, 6ify:E, 6ifz:G, 6ifz:F, 6ifz:E, 6ig0:G, 6ig0:F, 6ig0:E, 6nud:C, 6nud:E, 6nud:N, 6nud:O, 6nud:P, 6nue:C, 6nue:E, 6nue:N, 6nue:O, 6nue:P
21 8d0b:A 1116 32 0.0360 0.0116 0.4062 5.8 8d0k:A
22 7u5c:E 1147 32 0.0360 0.0113 0.4062 6.0
23 8soj:A 1158 32 0.0360 0.0112 0.4062 6.0 8sok:A
24 7tbd:A 357 51 0.0471 0.0476 0.3333 8.0 7tbd:B, 7tbe:A, 7tbe:B, 7tbe:C, 7tbe:D, 8tyh:A
25 4n0l:A 335 17 0.0305 0.0328 0.6471 8.9 4n0l:B
26 8x5d:K 235 16 0.0277 0.0426 0.6250 8.9 8wfx:I, 8wfx:J, 8wfx:K, 8wfx:L, 8wfx:G, 8wfx:H, 8x5d:L, 8x5d:J, 8x5d:I, 8x5d:H
27 3q2q:A 314 72 0.0609 0.0701 0.3056 9.3
28 1oac:B 723 45 0.0443 0.0221 0.3556 10.0 1d6u:A, 1d6u:B, 1d6y:A, 1d6y:B, 1d6z:A, 1d6z:B, 1dyu:A, 1dyu:B, 6ezz:A, 6ezz:B, 6grr:A, 6grr:B, 1jrq:A, 1jrq:B, 1lvn:A, 1lvn:B, 1oac:A, 1qaf:A, 1qaf:B, 1qak:A, 1qak:B, 1qal:A, 1qal:B, 1spu:A, 1spu:B, 2w0q:A, 2w0q:B, 2wgq:A, 2wgq:B, 2wo0:A, 2wo0:B, 2wof:A, 2wof:B, 2woh:A, 2woh:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218