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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MTELKQADQIRTWVQSVLTGHDWLHISRVADLAVYIGEKENADLFIVETAALVHDLIDVKLPDTIRLSVSEVYNQLVTFG
IGKEDADRVIHIITKMSPLSIEGKVVQDADRLDAIGAVGIARAFMFAGAKGHGLYGDDQSAYAHFFHKLLRLIDMMNTDT
ARELAEERHEFMLQYIRQLEKDIPGIDA

The query sequence (length=188) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5dqw:A 188 188 1.0000 1.0000 1.0000 5.76e-138 5dqw:B
2 2qgs:A 209 194 0.4255 0.3828 0.4124 5.22e-45 2qgs:B
3 3djb:A 188 189 0.4202 0.4202 0.4180 1.77e-41 3djb:B
4 3b57:A 180 179 0.3830 0.4000 0.4022 8.11e-38
5 2pq7:A 174 168 0.2713 0.2931 0.3036 5.72e-13
6 8d33:A 974 49 0.0957 0.0185 0.3673 0.94 8d37:A, 8d3r:A, 8d42:A, 8udl:A, 8v54:A
7 2c20:A 329 110 0.1330 0.0760 0.2273 3.8 2c20:B, 2c20:C, 2c20:D, 2c20:E, 2c20:F
8 6xfa:A 406 16 0.0479 0.0222 0.5625 6.4 6xfa:B, 6xfa:C, 6xfa:D, 6xfa:E, 6xfa:F, 6xfa:G, 6xfa:H, 6xfa:I, 6xfa:J
9 8auh:A 365 38 0.0745 0.0384 0.3684 7.5 8a8i:B, 8a8i:D, 8au8:A, 8au8:B, 8au9:B, 8au9:A, 8auf:A, 8auf:B, 8aug:A, 8aug:B, 8auh:B, 8aui:A, 8aui:B, 5cpl:A, 5cpl:B, 5cpm:A, 5cpm:B, 5cpn:A, 5cpn:B, 5cpo:A, 5cpo:B, 2h8x:A, 2h8z:A, 2h90:A, 3l5l:A, 3l5m:A, 3l65:A, 3l66:A, 3l67:A, 3l68:A, 5lni:A, 5lnj:A, 3n14:A, 3n19:B, 3n19:D, 5n6q:A, 5n6q:B, 4uth:A, 4uti:A, 4utj:A, 4utk:A, 4utl:A, 4utm:A
10 5x4j:A 471 104 0.1543 0.0616 0.2788 9.3 5x4h:A, 5x4i:A, 5x4k:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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