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BioLiP
>protein
MTEIATTSGARSVGLLSVGAYRPERVVTNDEICQSDEWIYTRTGIKTRRFAADDESAASMATEACRRALSNAGLSAADID
GVIVTTNTHFLQTPPAAPMVAASLGAKGILGFDLSAGCAGFGYALGAAADMIRGGGAATMLVVGTEKLSPTIDMYDRGNC
FIFADGAAAVVVGETPFQGIGPTVAGSDGEQADAIRQDIDWITFAQNPSGPRPFVRLEGPAVFRWAAFKMGDVGRRAMDA
AGVRPDQIDVFVPHQANSRINELLVKNLQLRPDAVVANDIEHTGNTSAASIPLAMAELLTTGAAKPGDLALLIGYGAGLS
YAAQVVRMPK

The query sequence (length=330) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2qnx:A 334 334 1.0000 0.9880 0.9880 0.0 2qnx:B, 2qny:A, 2qny:B, 2qnz:A, 2qnz:B, 2qo0:A, 2qo0:B, 2qo1:A, 2qo1:B, 2qx1:A, 2qx1:B, 1u6s:A, 1u6s:B
2 1mzj:A 334 319 0.4455 0.4401 0.4608 1.88e-91 1mzj:B
3 6kvs:A 313 324 0.3606 0.3802 0.3673 7.07e-63 6kvs:B
4 4nhd:D 318 318 0.3485 0.3616 0.3616 8.51e-58 4nhd:A, 4nhd:B, 4nhd:C
5 8d1u:A 318 319 0.3515 0.3648 0.3636 2.54e-55 5bnm:A, 5bnr:A, 5bns:A, 5bns:B, 1ebl:A, 1ebl:B, 2eft:A, 2eft:B, 2gyo:A, 1hnd:A, 1hnh:A, 1hnj:A, 1mzs:A, 6x7r:A, 4z8d:A, 4z8d:B
6 8vda:A 311 319 0.3606 0.3826 0.3730 1.99e-54
7 5bqs:A 323 320 0.3061 0.3127 0.3156 2.23e-46 5bqs:B
8 3il5:A 320 318 0.3000 0.3094 0.3113 3.42e-43 3il4:A, 3il4:B, 3il4:C, 3il4:D, 3il5:B, 3il5:C, 3il5:D, 3il6:A
9 4x0o:E 360 304 0.3212 0.2944 0.3487 5.61e-43 5kp2:B, 5v0p:A, 5v0p:B, 4x0o:A, 4x0o:B, 4x0o:D, 4x0o:F, 4x0o:G, 4x0o:H
10 3h77:B 338 334 0.3030 0.2959 0.2994 1.92e-30 3h77:A, 3h78:A, 3h78:B
11 5yo9:B 366 268 0.2152 0.1940 0.2649 5.72e-18 5yoa:B
12 3s20:A 344 332 0.2667 0.2558 0.2651 2.69e-13 6b2u:A, 4ku2:B, 4ku3:B, 4ku5:B, 3s20:B, 3s21:A, 3s23:A, 5vxe:A, 5vxg:A, 5vxi:A
13 6et3:A 309 339 0.2455 0.2621 0.2389 8.20e-11
14 6esq:I 347 323 0.2303 0.2190 0.2353 3.13e-09
15 3t6s:B 342 256 0.2182 0.2105 0.2812 1.10e-05
16 1z1f:A 388 301 0.2333 0.1985 0.2558 1.13e-05
17 5wgc:B 343 314 0.2303 0.2216 0.2420 2.27e-05 5wgc:A, 4xs9:A, 4xs9:B
18 6gw3:A 383 300 0.2091 0.1802 0.2300 3.83e-04 6gw3:B, 6gw3:C, 6gw3:D, 7w6g:C, 7w6g:D
19 4b0n:A 379 231 0.1939 0.1689 0.2771 0.001 4b0n:B
20 6hsj:B 390 108 0.0939 0.0795 0.2870 0.008 6hsp:B
21 6hsj:B 390 53 0.0576 0.0487 0.3585 7.7 6hsp:B
22 2d3m:A 405 288 0.2000 0.1630 0.2292 0.011 2d3m:B, 2d52:A, 2d52:B
23 4jap:C 353 294 0.2242 0.2096 0.2517 0.029 4jao:C, 4jao:B, 4jap:B, 4jap:A, 4jaq:D, 4jaq:A, 4jaq:C, 4jaq:B, 4jd3:C, 4jd3:B
24 7s04:A 396 46 0.0576 0.0480 0.4130 0.050
25 3wd7:A 401 349 0.2273 0.1870 0.2149 0.051 7cct:A, 6l7j:A, 3wd7:B
26 1xes:A 387 305 0.2061 0.1757 0.2230 0.053 1xes:B, 1xes:C, 1xes:D, 1xet:B, 1xet:C, 1xet:D
27 7d41:A 367 172 0.1333 0.1199 0.2558 0.081 7d41:B
28 7rsw:B 125 54 0.0576 0.1520 0.3519 0.16
29 1ee0:A 376 294 0.1848 0.1622 0.2075 0.25 1ee0:B
30 5gk1:A 379 325 0.2121 0.1847 0.2154 0.27 5gk1:C
31 7f08:J 379 301 0.2061 0.1794 0.2259 0.39 7f08:B, 7f08:D, 7f08:L
32 7zme:5 670 46 0.0394 0.0194 0.2826 0.58 7zmg:5
33 6op5:A 383 128 0.1030 0.0888 0.2656 0.61 6op5:B
34 1wl4:A 394 97 0.0788 0.0660 0.2680 0.73
35 7bur:B 389 128 0.1121 0.0951 0.2891 0.74 7bur:A, 8jrd:A, 8jrd:B
36 6hs0:B 201 46 0.0545 0.0896 0.3913 0.94 6c31:E, 6c31:F, 6c31:G, 6c31:H, 6c31:A, 6c31:B, 6c31:C, 6c31:D, 6hrw:A, 6hrx:A, 6hrx:B, 6hry:A, 6hry:B, 6hrz:A, 6hs0:A, 6hs1:B, 6hs2:B, 5icj:A, 5icj:B, 5n7o:A, 5n7o:B
37 7o4t:D 403 170 0.1303 0.1067 0.2529 1.3 4b3i:C, 4b3j:C, 4b3j:D, 7o1i:D, 7o1l:D, 7o4r:C, 7o4r:D, 7o4s:C, 7o4s:D, 7o4t:C, 8opu:C, 8opu:D, 8opx:C, 8opx:D, 8opy:D, 8oql:C, 8oql:D, 8oqm:D, 8oqo:C, 8oqo:D, 8oqp:C, 8oqp:D, 8oqs:C, 8oqs:D, 8pf8:C, 8pf8:D
38 3awj:A 380 179 0.1242 0.1079 0.2291 1.7
39 1chw:A 389 296 0.2000 0.1697 0.2230 2.8 1bq6:A, 1cgk:A, 1cgz:A, 1chw:B, 1cml:A, 1d6h:A, 1u0w:A, 1u0w:B, 1u0w:C, 1u0w:D
40 2w4o:A 278 72 0.0727 0.0863 0.3333 3.3
41 5wx3:C 353 129 0.1061 0.0992 0.2713 4.2
42 5wx6:B 376 129 0.1061 0.0931 0.2713 4.3 5wx3:A, 5wx3:B, 5wx3:D, 5wx6:A, 5wx6:C, 5wx6:D, 5wx7:A, 5wx7:B, 5wx7:C, 5wx7:D
43 8cp2:A 600 50 0.0515 0.0283 0.3400 4.5 8cp2:B, 8cp5:A, 8cp5:B
44 6j1m:A 381 72 0.0697 0.0604 0.3194 4.5 6j1m:B, 6j1n:A, 6j1n:B
45 7yj6:A 390 66 0.0636 0.0538 0.3182 4.7 7yj5:A, 7yj6:B, 7yj7:A, 7yj8:A, 7yj9:A, 7yja:A, 7yja:B, 7yjb:A
46 4yzo:C 347 101 0.0727 0.0692 0.2376 4.9 4yzo:D
47 8v8m:A 389 66 0.0667 0.0566 0.3333 5.4 8v8m:C
48 7lld:A 446 49 0.0515 0.0381 0.3469 5.6 7lld:B, 7lle:A, 7lle:B
49 7vf0:B 396 129 0.0970 0.0808 0.2481 5.8 7vez:A, 7vez:B, 7vez:C, 7vez:D, 7vf0:A, 7vf0:C, 7vf0:D
50 4jv3:A 407 59 0.0545 0.0442 0.3051 6.4 3mqd:A, 3u0e:A, 3u0f:A
51 4f32:B 423 146 0.1303 0.1017 0.2945 7.8 4f32:A
52 8agd:A 1111 106 0.0970 0.0288 0.3019 7.9 8acq:A, 8acq:C, 8acq:B, 8ae1:A, 8ae1:B, 8ae1:C, 8agd:C, 8agd:B, 7zgy:A, 7zgy:C, 7zgy:B
53 8ap0:AAA 332 113 0.0939 0.0934 0.2743 8.6 8aoz:AAA, 6yqq:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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