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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MSSPILGYTQGKMNQQRVGQDNRLYVRAGAAIDALGSASDLLVGGNGGSLSSVDLSGVKSITATSGDFQYGGQQLVALTF
TYQDGRQQTVGSKAYVTNAHEDRFDLPDAAKITQLKIWADDWLVKGVQFDLN

The query sequence (length=132) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1xez:A 663 131 0.9924 0.1976 1.0000 4.75e-87 4gx7:A, 4gx7:B, 4gx7:D, 4gx7:C, 4gx7:E, 4gx7:F, 8jc7:A, 8jc7:B, 8jc7:C, 8jc7:D, 8jc7:E, 8jc7:F, 8jc7:G
2 5v6f:A 137 135 0.4015 0.3869 0.3926 5.90e-30 5v6k:A
3 6mlt:A 603 120 0.2955 0.0647 0.3250 2.59e-18
4 8ag6:A 896 57 0.1439 0.0212 0.3333 2.2 2o8b:A, 2o8c:A, 2o8d:A, 2o8e:A, 2o8f:A, 8olx:A, 8om9:A, 8oma:A, 8omq:A, 3thw:A, 3thx:A, 3thy:A, 3thz:A
5 1l3i:A 186 45 0.1212 0.0860 0.3556 2.8 1l3i:B, 1l3i:C, 1l3i:D, 1l3i:E, 1l3i:F
6 4leb:A 299 90 0.1970 0.0870 0.2889 2.9
7 4hlu:A 265 88 0.1970 0.0981 0.2955 6.4 4hlu:B, 4zir:A
8 8gy9:A 249 31 0.1136 0.0602 0.4839 6.6 8gy9:B, 8gya:A, 8gya:B, 8gyb:A, 8gyb:B, 8gyb:C, 8gyb:D
9 5fx8:A 563 95 0.2045 0.0480 0.2842 7.8 5fx8:B
10 2h7y:A 280 56 0.1288 0.0607 0.3036 7.9 9cgl:A, 9cgl:B, 9cgn:A, 9cgn:B, 2h7x:A, 2h7x:B, 2h7y:B, 2hfj:A, 2hfk:A, 2hfk:B
11 2qua:A 615 47 0.0909 0.0195 0.2553 8.7 2qub:A, 2qub:C, 2qub:E, 2qub:G, 2qub:I, 2qub:K

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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