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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MSPLRRVLAELNRIPSSRRRAARLFEWLIAPMPPDHFYRRLWEREAVLVRRQDHTYYQGLFSTADLDSMLRNEEVQFGQH
LDAARYINGRRETLNPPGRALPAAAWSLYQAGCSLRLCSPQAFSTTVWQFLAVLQEQFGSMAGSNVYLTPPNSQGFAPHY
DDIEAFVLQLEGRKLWRVYRPRAPTEELALTSSPNFSQDDLGEPVLQTVLEPGDLLYFPRGFIHQAECQDGVHSLHLTLS
TYQRNTWGDFLEAILPLAVQAAMEENVEFRRGLPRDFMDYMGAQHSDSKDPRRTAFMEKVRVLVARLGHFAPVDAVADQR
AKDFIHDSLPPVLTDRERALSVYGLPIRWEAGEPVNVGAQLTTETEVHMLQDGIARLVGEGGHLFLYYTVENSRVYHLEE
PKCLEIYPQQADAMELLLGSYPEFVRVGDLPCDSVEDQLSLATTLYDKGLLLTKMPLAL

The query sequence (length=459) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4y3o:B 461 458 0.9913 0.9870 0.9934 0.0 4cck:A, 4cck:B, 4cck:C, 4cck:D, 4ccm:A, 4ccm:B, 4ccn:A, 4ccn:B, 4cco:A, 4cco:B, 4diq:A, 4diq:B, 4e4h:A, 4e4h:B, 4e4h:C, 4e4h:D, 4y3o:A
2 4bxf:A 425 437 0.3181 0.3435 0.3341 1.02e-68 4bxf:B
3 4bu2:A 379 436 0.3094 0.3747 0.3257 8.80e-59
4 7zcc:B 326 172 0.0915 0.1288 0.2442 2.32e-07 1vrb:A, 1vrb:B, 1vrb:D, 7zcc:A, 7zcc:C, 7zcc:D
5 4ccl:B 372 75 0.0610 0.0753 0.3733 6.53e-07 4ccl:A, 4lit:A, 4liv:A, 4nub:A
6 1vrb:C 298 127 0.0654 0.1007 0.2362 1.93e-04
7 4csw:A 388 76 0.0523 0.0619 0.3158 0.022 4csw:B, 4cug:A, 4cug:B
8 6f4n:B 243 86 0.0545 0.1029 0.2907 0.037 4aap:A, 4aap:B, 6avs:A, 6ax3:A, 7dyt:A, 7dyu:A, 7dyv:A, 7dyw:A, 7dyx:A, 6f4n:A, 6f4o:A, 6f4p:A, 6f4q:A, 6f4r:A, 6f4s:A, 6f4t:A, 5fbj:A, 4gjy:A, 4gjz:A, 6i9l:A, 6i9m:A, 6i9n:A, 4qu1:A, 7uq3:A, 3uyj:A, 3uyj:B
9 1hbr:A 141 34 0.0261 0.0851 0.3529 0.55 1hbr:C
10 1rcq:A 357 68 0.0501 0.0644 0.3382 0.63
11 1v75:A 141 35 0.0240 0.0780 0.3143 1.4 1wmu:A, 2z6n:A
12 3al5:B 311 131 0.0806 0.1190 0.2824 2.8 3al5:D, 3al6:B, 3al6:D
13 3msu:B 426 67 0.0458 0.0493 0.3134 5.7 3msu:A
14 5m0t:A 287 73 0.0436 0.0697 0.2740 5.8 5m0t:B
15 6igz:0 202 110 0.0632 0.1436 0.2636 7.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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