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BioLiP
>protein
MSLLEYEAKFSELNPNRRHGNTSPHKIAMLLAVMDLIESGSLQENRIYFDRQLKDAFTKRFNELKSEADRDNPHLPYYHL
HTSGFWHHQVNPGQRESYKTMSASGASAIDQHIAYAYLDEELFELLQNFTVRKLLTSALDRNFAIT

The query sequence (length=146) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8h0l:A 152 146 1.0000 0.9605 1.0000 8.04e-109 8h0l:B
2 4wbd:A 540 39 0.0822 0.0222 0.3077 0.45
3 3s27:H 797 35 0.0822 0.0151 0.3429 1.4 3s27:A, 3s27:B, 3s27:C, 3s27:D, 3s27:E, 3s27:F, 3s27:G, 3s28:A, 3s28:B, 3s28:C, 3s28:D, 3s28:E, 3s28:F, 3s28:G, 3s28:H, 3s29:A, 3s29:B, 3s29:C, 3s29:D, 3s29:E, 3s29:F, 3s29:G, 3s29:H
4 8hz4:A 456 62 0.1575 0.0504 0.3710 1.5 8hz4:B, 8hz4:C, 8hz4:D
5 3jck:G 257 58 0.0753 0.0428 0.1897 2.3 3j47:V, 4o8x:B, 4ocl:B, 4ocl:E, 4ocm:B, 4ocm:E, 4owp:B, 5u4p:B, 5w83:B
6 8skf:A 497 59 0.0959 0.0282 0.2373 2.5 8skf:B, 8uzk:A, 8uzk:B, 8uzk:C, 8uzk:D, 8uzm:A, 8uzm:B, 8uzm:C, 8uzm:D, 8uzn:A, 8uzn:B, 8uzn:C, 8uzn:D, 8uzo:A, 8uzo:B, 8uzo:C, 8uzo:D, 8vj3:A, 8vj3:B, 8vj3:C, 8vj3:D, 8vqw:C, 8vqw:D, 8vqz:A, 8vqz:B, 8vqz:C, 8vqz:D, 8vr0:A, 8vr0:B, 8vr0:C, 8vr1:A, 8vr1:B, 8vr1:C, 8vr1:D
7 1q3i:A 192 62 0.1164 0.0885 0.2742 4.6
8 7cms:A 328 36 0.0890 0.0396 0.3611 7.1 7cki:A, 7cms:B, 5dk4:A, 7eer:A, 7eer:B, 7eer:C, 7eer:D, 1i6k:A, 1i6l:A, 1i6m:A, 1m83:A, 1mau:A, 1maw:A, 1maw:B, 1maw:C, 1maw:D, 1maw:E, 1maw:F, 1mb2:A, 1mb2:B, 1mb2:C, 1mb2:D, 1mb2:E, 1mb2:F, 2ov4:A
9 3fi0:G 302 36 0.0890 0.0430 0.3611 7.6 3fhj:A, 3fhj:B, 3fhj:E, 3fhj:F, 3fi0:A, 3fi0:B, 3fi0:C, 3fi0:D, 3fi0:E, 3fi0:F, 3fi0:H, 3fi0:I, 3fi0:J, 3fi0:K, 3fi0:L, 3fi0:M, 3fi0:N, 3fi0:O, 3fi0:P, 3fi0:Q, 3fi0:R
10 5dcs:A 287 51 0.1096 0.0557 0.3137 9.1 5dco:A, 5dcr:A, 5ekb:A, 6f65:A, 6f6b:A, 6f6c:A, 6f6c:B, 6f6e:A, 6f6e:B, 6f6f:A, 6f6g:A, 6f6g:B, 6f6h:A, 6f6h:B, 6f6k:A, 6f6k:B, 6f6l:A, 6f6l:B, 6f6m:A, 6f6m:B, 4hr0:A, 4hr4:A, 6i90:A, 6i92:A, 6i93:A, 6i94:A, 6i95:A, 5omj:A, 5omk:A, 6qjv:A, 6qk0:A, 6qk0:B, 6qk1:A, 6qk2:A, 6qk2:B, 4xb9:A, 4xbv:A, 4xbv:B, 4xbw:A
11 8hvc:A 602 48 0.0959 0.0233 0.2917 9.5 8hvb:A, 8hvd:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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