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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MSLAVEAVKDFLLKLQDDICEALEAEDGQATFVEDKWTGGRTRVMVDGAVIEKGGVNFSHVYGCNFEAMGVSLVIHPKNP
HVPTSHANVRLFVAEPVWWFGGGFDLTPYYAVEEDCRDFHQVAQDLCKPFGADVYARFKGWCDEYFFIPYRNEARGIGGL
FFDDLNEWPFEKCFEFVQAVGKGYMDAYIPIVNRRKNTPYTEQQVEFQEFRRGRYAEFNLVIDRGTKFGLQSGGRTESIL
ISLPPRARWGYNWQPEPGTPEARLTEYFLTKRQWV

The query sequence (length=275) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3dwr:B 275 275 1.0000 1.0000 1.0000 0.0
2 3dws:B 304 301 1.0000 0.9046 0.9136 0.0 3dwr:A, 3dws:A
3 6fmr:A 475 72 0.0764 0.0442 0.2917 2.4 4d2b:A, 4d2d:A, 5d58:A, 5d59:A, 6eia:A, 6fmy:A, 6ghj:A, 5oxl:A, 5oxm:A, 5oxn:A, 5oxo:A, 5oxq:A, 4xnj:A, 6yof:A, 6yog:A
4 5oxp:A 462 72 0.0764 0.0455 0.2917 2.6 7ac6:A, 4d2c:A, 5d6k:A, 5oxk:A, 4xni:A
5 7oyc:Q1 180 36 0.0509 0.0778 0.3889 3.7
6 5gw7:B 760 45 0.0582 0.0211 0.3556 4.8 5ca3:A, 5ca3:B, 3d3i:A, 3d3i:B, 5gw7:A, 3w7s:A, 3w7s:B, 3w7t:A, 3w7t:B, 3w7u:A, 3w7u:B, 3w7w:A, 3w7w:B, 3w7x:A, 3w7x:B
7 8wmy:A 198 33 0.0327 0.0455 0.2727 4.9 8wmy:B
8 6xux:A 879 45 0.0582 0.0182 0.3556 5.6
9 8imu:A 523 43 0.0545 0.0287 0.3488 9.3 8imu:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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