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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MSKRLPPLNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQSYFLDIKEIFSQL
TEATRKLQARSA

The query sequence (length=92) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8y6u:H 92 92 1.0000 1.0000 1.0000 5.53e-62 8y6u:J
2 5y2v:A 304 73 0.4130 0.1250 0.5205 6.39e-18 5y2v:B, 5y2v:C, 5y2v:D, 5y2w:A
3 4ihs:B 93 63 0.2717 0.2688 0.3968 2.98e-09 4ihs:A, 4ihs:C, 4ihs:D, 4iht:A, 4iht:B, 4iht:C, 4iht:D
4 8h3v:S 304 80 0.3587 0.1086 0.4125 1.40e-07 8h3v:T, 8h3v:U, 8h3v:V
5 9f14:A 324 69 0.2174 0.0617 0.2899 9.97e-06 9f14:B, 9fdd:A, 9fdd:B, 9fdd:C, 9fdd:D, 9fdd:E, 9fdd:F, 9fdd:G, 9fdd:H, 4lq2:A, 4lq5:A, 4m4g:A
6 6g4r:B 322 62 0.2283 0.0652 0.3387 8.06e-05 6g1b:J, 6g4r:E
7 3fxr:A 296 58 0.2174 0.0676 0.3448 0.049 3fxu:A, 3fxu:B, 3n6u:A
8 1br6:A 268 53 0.1630 0.0560 0.2830 2.8 1br5:A, 5ddz:A, 3ej5:X, 4esi:A, 5gu4:A, 5gu4:B, 3hio:A, 4huo:X, 4hup:X, 4hv3:A, 4hv7:X, 8i7p:A, 1ifs:A, 1ifu:A, 1il3:A, 1il4:A, 1il5:A, 1il9:A, 1j1m:A, 7kc9:D, 7kd0:A, 7kdm:D, 7kdu:A, 4lgr:A, 7mln:A, 7mlo:A, 7mlo:B, 7mlp:A, 7mlt:A, 4mx1:A, 4mx5:X, 1obt:A, 6obg:B, 6ocd:A, 6ocd:C, 2p8n:A, 2pjo:A, 3px8:X, 3px9:X, 4q2v:A, 2r2x:A, 3rti:A, 3rtj:A, 1rzo:A, 1rzo:C, 8t9v:A, 8tab:A, 8tad:A, 6urw:A, 6urx:A, 6ury:A, 7xzs:A, 7xzt:A, 7xzu:A, 7xzw:A, 7y02:A, 7y03:A, 7y05:A, 7y06:A, 7y07:A, 7y08:A, 7y4k:A, 7y4m:A, 4z9k:A
9 1r23:A 104 34 0.1413 0.1250 0.3824 3.7 1r22:A, 1r22:B, 1r23:B
10 6cdb:A 97 81 0.2500 0.2371 0.2840 5.0 6cda:A, 6cdb:B, 4ggg:A, 4ggg:B, 2m30:A, 2m30:B, 1r1v:A
11 3icq:T 949 40 0.1848 0.0179 0.4250 9.5 3icq:U
12 7lyu:B 371 36 0.1304 0.0323 0.3333 9.9 7lyu:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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