Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAKQGIEVDIYTRATRPSQGEIVRVAENLRVINIAAGPYEGLSKEE
LPTQLAAFTGGMLSFTRREKVTYDLIHSHYWLSGQVGWLLRDLWRIPLIHTAHTLAAVDTPESEARRICEQQLVDNADVL
AVNTQEEMQDLMHHYDADPDRISVVSPGADVELYSPGNDRATERSRRELGIPLHTKVVAFVGRLQPFKGPQVLIKAVAAL
FDRDPDRNLRVIICGGPTYRHMAEELGVEKRIRFLDPRPPSELVAVYRAADIVAVPSFNESFGLVAMEAQASGTPVIAAR
VGGLPIAVAEGETGLLVDGHSPHAWADALATLLDDDETRIRMGEDAVEHARTFSWAATAAQLSSLYNDAIANE

The query sequence (length=393) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3c4q:A 393 393 1.0000 1.0000 1.0000 0.0 3c4q:B, 3c4v:A, 3c4v:B
2 6kih:A 400 406 0.3257 0.3200 0.3153 5.68e-59 6kih:C, 6kih:D, 6kih:E, 6kih:F, 6kih:H, 6kih:I, 6kih:K, 6kih:L, 6kih:B, 6kih:G, 6kih:J
3 2r66:A 456 419 0.2799 0.2412 0.2625 3.95e-21 2r68:A
4 2bis:A 440 446 0.2926 0.2614 0.2578 1.11e-20 2bis:C, 3fro:B, 3l01:A, 3l01:B
5 3mbo:E 375 385 0.2494 0.2613 0.2545 3.71e-19 3mbo:A, 3mbo:C, 3mbo:H
6 3oka:A 378 207 0.1705 0.1772 0.3237 1.31e-18 3oka:B, 3okc:A, 3okp:A
7 2gej:A 361 181 0.1450 0.1579 0.3149 6.76e-16 2gek:A, 4n9w:A
8 4xsu:A 368 276 0.1832 0.1957 0.2609 7.58e-14 4xsp:A, 4xsr:B, 4xsr:A, 4xsu:B
9 5d00:A 361 309 0.1934 0.2105 0.2460 1.94e-13 5d00:B, 5d01:A, 5d01:B
10 2iv7:A 370 218 0.1501 0.1595 0.2706 6.29e-12 2iw1:A
11 6zn1:AAA 400 175 0.1476 0.1450 0.3314 1.38e-11 6zjh:AAA, 6zmz:AAA
12 8cxo:A 551 290 0.2010 0.1434 0.2724 1.39e-11
13 3vuf:A 488 171 0.1196 0.0963 0.2749 1.89e-11
14 6hlp:A 485 218 0.1756 0.1423 0.3165 2.81e-11 6e59:A, 6hll:A, 6hlo:A
15 6w25:A 468 164 0.1425 0.1197 0.3415 4.10e-11 8wky:A, 8wkz:A
16 7w41:A 484 166 0.1476 0.1198 0.3494 4.46e-11
17 6lfl:A 471 164 0.1425 0.1189 0.3415 4.72e-11
18 7br3:A 470 164 0.1425 0.1191 0.3415 5.15e-11
19 6kuw:A 474 210 0.1654 0.1371 0.3095 5.37e-11 6kuw:B
20 6v9s:A 503 164 0.1425 0.1113 0.3415 5.96e-11 4zj8:A, 4zjc:A
21 6tpn:A 510 164 0.1425 0.1098 0.3415 6.08e-11 4s0v:A, 6tpg:A, 6tpj:A, 6tpj:B, 5wqc:A, 5ws3:A
22 6fj3:A 562 164 0.1425 0.0996 0.3415 6.40e-11 8d51:A, 8d52:A, 7uzo:A, 7uzp:A, 7uzp:C, 7uzp:E
23 6me2:A 486 164 0.1425 0.1152 0.3415 6.74e-11 6me3:A, 6me4:A, 6me5:A, 6ps8:A
24 7fee:A 486 164 0.1425 0.1152 0.3415 6.92e-11 6kqi:A, 5u09:A
25 6n1x:A 377 153 0.1094 0.1141 0.2810 8.50e-11 6d9t:A
26 6tpk:A 461 164 0.1425 0.1215 0.3415 9.44e-11 7qvm:R
27 7fga:B 344 409 0.2468 0.2820 0.2372 2.07e-09 7fg9:A, 7fg9:B, 7fga:D, 7fga:A, 7fga:C
28 8b5q:B 365 245 0.1730 0.1863 0.2776 4.28e-09 8b5q:A, 8b5s:A, 8b5s:B, 8b62:A, 8b62:B, 8b63:A, 8b63:B
29 2xa2:A 412 166 0.1196 0.1141 0.2831 5.54e-08 2xa2:B, 2xa9:A, 2xa9:B, 2xmp:A, 2xmp:B
30 8dqd:A 370 253 0.1425 0.1514 0.2213 1.26e-07 8dvw:A, 8dvz:A
31 6eji:A 360 162 0.1069 0.1167 0.2593 4.71e-07 6eji:B, 6ejj:A, 6ejj:B, 6ejk:A, 6ejk:B
32 6gne:B 494 218 0.1323 0.1053 0.2385 8.30e-06 6gne:A
33 5zer:A 354 173 0.1196 0.1328 0.2717 7.46e-05 5zer:B, 5zes:A, 5zfk:A, 5zfk:B
34 4pqg:A 506 122 0.0840 0.0652 0.2705 5.41e-04 4pqg:B
35 6gng:B 526 161 0.1069 0.0798 0.2609 8.88e-04 6gng:A
36 5e9u:A 503 207 0.1272 0.0994 0.2415 0.003 5e9u:E
37 7ec3:A 500 167 0.0992 0.0780 0.2335 0.004 7ec3:C, 7ec6:A, 7ec7:A, 7ec7:B, 7vfl:A, 7vfl:C, 7vfm:A, 7vfm:C, 7vfn:A, 7vfo:A, 7vfo:B
38 3s27:H 797 58 0.0483 0.0238 0.3276 0.006 3s27:A, 3s27:B, 3s27:C, 3s27:D, 3s27:E, 3s27:F, 3s27:G, 3s28:A, 3s28:B, 3s28:C, 3s28:D, 3s28:E, 3s28:F, 3s28:G, 3s28:H, 3s29:A, 3s29:B, 3s29:C, 3s29:D, 3s29:E, 3s29:F, 3s29:G, 3s29:H
39 6gnf:B 492 162 0.1145 0.0915 0.2778 0.016
40 6gnf:A 522 162 0.1145 0.0862 0.2778 0.020 6gnf:C
41 8jjn:C 326 128 0.0967 0.1166 0.2969 0.030 8jjn:A, 8jjn:B, 8jjq:C, 8jjq:A, 8jjq:B, 8jjt:C, 8jjt:A, 8jjt:B, 8rz3:A, 8rz3:B, 8rz3:C
42 4hln:A 504 201 0.1247 0.0972 0.2438 0.040
43 3oy7:A 392 60 0.0509 0.0510 0.3333 0.12 3oy7:B
44 3guh:A 477 252 0.1603 0.1321 0.2500 0.18 3cop:A, 3cx4:A, 2qzs:A, 2r4t:A, 2r4u:A
45 7qzl:D 341 28 0.0331 0.0381 0.4643 3.9 6iau:B, 7qzl:A, 7qzn:A, 7qzn:B
46 8qoy:A 1036 117 0.0687 0.0261 0.2308 6.3
47 6ts2:D 1123 103 0.0814 0.0285 0.3107 6.4 6ts2:A, 6ts2:B, 6ts2:C
48 5n2j:B 1381 103 0.0814 0.0232 0.3107 6.6 6fsn:A, 5mu1:A, 5mzo:A, 5n2j:A, 3wzs:A, 7zhb:A, 7zkc:A, 7zle:A, 7zll:A, 7zlu:A, 7zlu:B, 7zlu:C, 7zxw:A
49 6trf:A 1319 103 0.0814 0.0243 0.3107 6.7
50 8t19:A 86 41 0.0407 0.1860 0.3902 6.9
51 3ivc:A 298 46 0.0483 0.0638 0.4130 8.1 2a7x:A, 2a84:A, 2a86:A, 2a86:B, 3cow:A, 3cow:B, 3coy:A, 3coy:B, 3coz:A, 3coz:B, 4ddh:A, 4ddh:B, 4ddk:A, 4ddk:B, 4ddm:A, 4ddm:B, 4de5:A, 4de5:B, 4ef6:A, 4ef6:B, 4efk:A, 4efk:B, 4fzj:A, 4fzj:B, 4g5f:A, 4g5f:B, 4g5y:A, 4g5y:B, 3imc:A, 3imc:B, 3ime:A, 3ime:B, 3img:A, 3img:B, 3iob:A, 3iob:B, 3ioc:A, 3ioc:B, 3iod:A, 3iod:B, 3ioe:A, 3ioe:B, 3isj:A, 3isj:B, 3iub:A, 3iub:B, 3iue:A, 3iue:B, 3ivc:B, 3ivg:B, 3ivx:A, 3ivx:B, 3le8:A, 3le8:B, 4mq6:A, 4mq6:B, 4mue:A, 4mue:B, 4muf:A, 4muf:B, 4mug:A, 4mug:B, 4muh:A, 4muh:B, 4mui:A, 4mui:B, 4muj:A, 4muj:B, 4muk:A, 4muk:B, 4mul:A, 4mul:B, 4mun:A, 4mun:B, 1n2b:A, 1n2b:B, 1n2e:A, 1n2e:B, 1n2g:A, 1n2g:B, 1n2h:A, 1n2h:B, 1n2i:A, 1n2i:B, 1n2j:A, 1n2j:B, 1n2o:B
52 5jio:A 467 79 0.0611 0.0514 0.3038 8.5 5k41:A, 5k42:A, 5k44:A, 5k5c:A, 5l3k:A, 5l3k:B, 5l3k:C, 5l3k:D, 5l3k:E, 5l3k:F, 5l3k:G, 5l3k:H
53 3h8i:A 356 68 0.0509 0.0562 0.2941 8.7 3h8i:B, 3h8l:A, 3h8l:B
54 8ila:A 429 144 0.1069 0.0979 0.2917 8.9 8ila:C, 8ila:B, 8ila:D, 8ixq:B, 8ixq:D
55 5djs:A 520 48 0.0407 0.0308 0.3333 9.6 5djs:B, 5djs:C, 5djs:D

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218