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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MRMQTKLIHGGISEDATTGAVSVPIYQTSTYRQDAIGYEYSRSGNPTRFALEELIADLEGGVKGFAFASGLAGIHAVFSL
LQSGDHVLLGDDVYGGTFRLFNQVLVKNGLSCTIIDTSDISQIKKAIKPNTKALYLETPSNPLLKITDLAQCASVAKDHG
LLTIVDNTFATPYYQNPLLLGADIVAHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDSWLLQRGIKT
LGLRMEAHQKNALCVAEFLEKHPKVERVYYPGLPTHPNYELAKKQMRGFSGMLSFTLKNDSEAVAFVESLKLFILGESLG
GVESLVGIPAFMTAAGIRDGLVRLSVGIEHEQDLLEDLEQAFAKI

The query sequence (length=365) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4l0o:H 373 375 0.9945 0.9732 0.9680 0.0 4l0o:A, 4l0o:C, 4l0o:E, 4l0o:G, 4l0o:M, 4l0o:O
2 6ldo:A 381 378 0.5918 0.5669 0.5714 5.86e-157 6ldo:B, 6ldo:C, 6ldo:D, 6ldo:E, 6ldo:F, 6le4:A, 6le4:B, 6le4:C, 6le4:D, 6le4:E, 6le4:F
3 7d7o:B 377 377 0.5863 0.5676 0.5676 2.49e-156 7d7o:A
4 7mcb:H 380 374 0.5425 0.5211 0.5294 1.73e-145 7mcl:H, 7mcn:H, 7mcp:A, 7mcp:H, 7mcq:A, 7mcq:H, 7mct:H, 7mcu:H, 7mcy:H, 7md0:H, 7md6:H, 7md8:H, 7mda:H, 7mdb:H
5 4iyo:D 384 379 0.5616 0.5339 0.5409 5.53e-136 4ixs:B, 4ixz:A, 4iy7:A, 4iy7:B, 4iy7:C, 4iy7:D, 4iyo:A, 4iyo:B, 4iyo:C
6 7ba4:A 377 374 0.5178 0.5013 0.5053 4.34e-131 7ba4:B, 7ba4:C, 7ba4:D
7 8jui:A 380 377 0.5205 0.5000 0.5040 4.96e-131
8 6k1l:A 382 379 0.5534 0.5288 0.5330 2.83e-129 6k1l:B, 6k1l:C, 6k1l:D, 6k1m:A, 6k1m:B, 6k1m:C, 6k1m:D, 6k1n:A, 6k1n:B, 6k1n:C, 6k1n:D
9 6cja:A 381 375 0.5507 0.5276 0.5360 6.12e-128 6cja:B, 6cja:C, 6cja:D
10 8j6n:A 390 375 0.4904 0.4590 0.4773 1.56e-117 8j6n:D, 8j6n:B, 8j6n:C, 8j6n:E, 8j6n:H, 8j6n:J, 8j6n:K, 8j6n:F, 8j6n:G, 8j6n:I, 8j6n:L
11 3qhx:A 377 374 0.4986 0.4828 0.4866 2.49e-117 3qhx:B
12 3cog:D 392 360 0.4822 0.4490 0.4889 7.16e-114 3cog:A, 3cog:B, 3cog:C, 5eig:C, 5eig:D, 5eig:E, 5eig:F, 5eig:G, 6nba:A, 6nba:B, 6nba:C, 6nba:D, 2nmp:A, 2nmp:B, 2nmp:C, 2nmp:D, 5tsu:A, 5tsu:C, 5tsu:D, 5tsu:E, 5tsu:F, 5tsu:G, 5tsu:H
13 5x5h:A 385 374 0.4904 0.4649 0.4786 1.47e-113
14 5dx5:A 399 389 0.4986 0.4561 0.4679 8.54e-109 5dx5:B
15 6egr:A 396 387 0.4521 0.4167 0.4264 1.77e-105 5d5s:A, 5e4z:A, 4hf8:A, 3jw9:A, 3jwa:A, 3jwb:A, 5k30:A, 5m3z:A, 3mkj:A, 4oma:A, 6s0c:A
16 1ibj:A 380 357 0.4164 0.4000 0.4258 6.54e-104 1ibj:C
17 6ld8:A 388 376 0.4630 0.4356 0.4495 1.43e-102 6ld8:D, 6ld8:B, 6ld8:C, 6ld9:A, 6ld9:B, 6ld9:C, 6ld9:D, 6lgo:A, 6lgo:B, 6lgo:C, 6lgo:D
18 1n8p:A 393 387 0.4795 0.4453 0.4522 1.48e-100 1n8p:B, 1n8p:C, 1n8p:D
19 1e5e:A 394 388 0.4575 0.4239 0.4304 1.24e-98 1e5e:B, 1e5f:A, 1e5f:B
20 1pg8:A 398 384 0.4466 0.4095 0.4245 3.51e-95 7f1u:A, 7f1u:B, 7f1u:C, 7f1u:D, 7f1v:A, 7f1v:B, 7f1v:C, 7f1v:D, 1pg8:C, 1pg8:B, 1pg8:D, 3vk3:A, 3vk3:B, 3vk3:C, 3vk3:D, 5x2w:A, 5x2w:B, 5x2w:C, 5x2w:D, 5x2x:A, 5x2x:B, 5x2x:C, 5x2x:D, 5x2z:A, 5x2z:B, 5x2z:C, 5x2z:D, 5x30:A, 5x30:B, 5x30:C, 5x30:D
21 1cs1:D 384 377 0.4192 0.3984 0.4058 4.06e-95
22 3aej:A 387 362 0.4055 0.3824 0.4088 1.20e-92 3aej:D, 3aej:B, 3aej:C, 3ael:A, 3ael:D, 3ael:B, 3ael:C, 3aem:A, 3aem:D, 3aem:B, 3aem:C, 3aen:A, 3aen:D, 3aen:B, 3aen:C, 3aeo:A, 3aeo:D, 3aeo:B, 3aeo:C, 3aep:A, 3aep:D, 3aep:B, 3aep:C
23 7nl1:D 400 383 0.4082 0.3725 0.3890 2.47e-89 8bis:C, 8bis:A, 8biu:G, 8biu:A, 8biv:A, 8biv:E, 8biw:E, 8biw:A, 8bix:C, 8bix:A, 8biz:E, 8biz:A, 7nl1:A, 7nl1:B, 7nl1:C, 7nl1:E, 7nl1:F, 7nl1:G, 7nl1:H
24 1qgn:A 398 385 0.4055 0.3719 0.3844 5.92e-81 1i41:A, 1i41:C, 1i41:B, 1i41:D, 1i41:E, 1i41:G, 1i41:F, 1i41:H, 1i41:I, 1i41:K, 1i41:J, 1i41:L, 1i43:A, 1i43:C, 1i43:B, 1i43:D, 1i43:E, 1i43:G, 1i43:F, 1i43:H, 1i43:I, 1i43:K, 1i43:J, 1i43:L, 1i48:A, 1i48:C, 1i48:B, 1i48:D, 1i48:E, 1i48:G, 1i48:F, 1i48:H, 1i48:I, 1i48:K, 1i48:J, 1i48:L, 1qgn:C, 1qgn:B, 1qgn:D, 1qgn:E, 1qgn:G, 1qgn:F, 1qgn:H
25 8wko:A 425 421 0.3863 0.3318 0.3349 2.37e-64 8wko:B, 8wkr:A, 8wkr:B, 8wkr:C, 8wkr:D
26 7kb1:A 428 419 0.4055 0.3458 0.3532 3.74e-64 7kb1:B, 7kb1:C, 7kb1:D
27 2ctz:A 421 422 0.4000 0.3468 0.3460 8.20e-60 2ctz:B
28 8erb:K 429 421 0.3781 0.3217 0.3278 3.65e-58 8erb:A, 8erb:C, 8erb:B, 8erb:D, 8erb:G, 8erb:H, 8erb:F, 8erb:P, 8erb:I, 8erb:J, 8erb:M, 8erb:E, 8erb:Q, 8erb:N, 8erb:L, 8erj:A, 8erj:B, 8erj:C, 8erj:D, 8erj:E, 8erj:F, 8erj:H, 8erj:G
29 1cl1:B 392 395 0.3370 0.3138 0.3114 4.79e-58 1cl1:A, 1cl2:A, 1cl2:B, 2fq6:A, 2fq6:B, 2gqn:A, 2gqn:B, 4itx:A, 4itx:B
30 8sad:A 398 392 0.3288 0.3015 0.3061 1.60e-55 8sa7:A, 8sa7:B, 8sa8:A, 8sa8:D, 8sa8:B, 8sa8:C, 8sa9:A, 8sa9:B, 8saa:A, 8saa:B, 8sab:A, 8sab:B, 8sac:A, 8sac:D, 8sac:B, 8sac:C, 8sad:B, 8sae:A, 8sae:B, 8u98:A, 8u98:D, 8u98:B, 8u98:C, 8u99:A, 8u99:B
31 5ijg:B 403 397 0.3562 0.3226 0.3275 2.20e-53 5ijg:A
32 8ovh:A 400 392 0.3616 0.3300 0.3367 5.83e-48 8ovh:B, 8ovh:C, 8ovh:D
33 2cb1:A 404 405 0.3534 0.3193 0.3185 7.28e-48
34 7yeo:B 382 373 0.3370 0.3220 0.3298 1.55e-42 7yeo:A
35 1v2e:A 368 117 0.1041 0.1033 0.3248 5.76e-06 1v2d:A, 1v2e:B, 1v2f:A, 1v2f:B
36 1gd9:A 388 145 0.0959 0.0902 0.2414 0.002 1dju:A, 1dju:B, 1gd9:B, 1gde:A, 1gde:B
37 2o0r:A 385 106 0.0849 0.0805 0.2925 0.054 2o0r:B
38 1j32:A 388 58 0.0548 0.0515 0.3448 0.062 1j32:B
39 7cep:A 414 120 0.0767 0.0676 0.2333 0.075 7ceo:A, 7cer:A, 7ces:A, 7e6b:A, 7e6c:A, 7e6e:A, 7e6f:A, 5j8q:A, 6kfz:A, 7xej:A, 7xek:A, 7xen:A, 7xep:A, 7xet:A, 5xt5:A, 5xt5:B, 5xt6:A, 5xt6:B, 5zsk:A, 5zso:A
40 1b5o:A 382 107 0.0767 0.0733 0.2617 0.093 1b5o:B, 1b5p:A, 1b5p:B, 1bjw:A, 1bjw:B, 5bj3:A, 5bj3:B, 5bj3:C, 5bj3:D, 5bj4:A, 5bj4:B, 1bkg:A, 1bkg:B, 1bkg:C, 1bkg:D, 1gc3:A, 1gc3:B, 1gc3:C, 1gc3:D, 1gc3:E, 1gc3:F, 1gc3:G, 1gc3:H, 1gc4:A, 1gc4:B, 1gc4:C, 1gc4:D, 1gck:A, 1gck:B
41 3w1k:B 452 182 0.1178 0.0951 0.2363 0.17 3w1k:A, 3w1k:C, 3w1k:D, 3w1k:E
42 3fvs:B 419 48 0.0493 0.0430 0.3750 0.19 3fvu:A, 3fvu:B, 1w7l:A, 1w7m:A, 1w7n:A, 4wlj:A, 4wlj:B
43 8wkj:A 391 148 0.0986 0.0921 0.2432 0.36
44 5b7u:A 402 118 0.0822 0.0746 0.2542 0.38 5b7u:B, 5b87:A, 5b87:B, 5b89:A, 5b89:B
45 3e2y:A 410 105 0.0822 0.0732 0.2857 0.63 3e2y:B, 3e2z:A, 3e2z:B, 5vep:A, 5veq:A, 5veq:B, 5ver:A, 5ver:B
46 5eud:A 454 66 0.0493 0.0396 0.2727 0.86 5eud:B, 5eue:A, 5eue:B, 3mad:A, 3mad:B, 3mau:A, 3mau:B, 3mau:C, 3mau:D, 3mbb:A, 3mbb:B
47 4bmk:A 398 129 0.0795 0.0729 0.2248 0.94 4bmk:B, 2jg2:A, 2w8j:A, 2w8t:A, 2w8u:A, 2w8v:A, 2w8w:A, 2xbn:A
48 8gme:D 406 111 0.0822 0.0739 0.2703 1.2
49 4cvq:A 404 113 0.0740 0.0668 0.2389 1.4 4cvq:B
50 6tcv:B 397 79 0.0658 0.0605 0.3038 2.1
51 7nwf:A 432 79 0.0658 0.0556 0.3038 2.2 6t8k:A, 6t8k:B, 6t8l:A, 6tcw:A
52 2r5c:B 419 54 0.0411 0.0358 0.2778 2.5 2r5e:A, 2r5e:B, 1yiy:A, 1yiy:B
53 6yq4:B 480 48 0.0384 0.0292 0.2917 4.4 6yq4:A, 6yq4:C
54 6xu2:A 1091 66 0.0548 0.0183 0.3030 5.0 6xte:A
55 3if2:A 437 44 0.0356 0.0297 0.2955 5.5 3if2:B
56 8snj:A 370 178 0.1068 0.1054 0.2191 5.6 8sng:A, 8sng:B, 8snj:B, 8snj:C, 8snj:D, 8snj:E, 8snj:F, 8su6:A, 8su6:B
57 3rq1:A 414 43 0.0438 0.0386 0.3721 5.8 3rq1:B, 3rq1:C
58 1t3i:A 406 200 0.1205 0.1084 0.2200 7.0 1t3i:B
59 1xi9:C 393 97 0.0658 0.0611 0.2474 8.0 1xi9:A, 1xi9:B, 1xi9:D
60 3o0h:B 459 79 0.0712 0.0566 0.3291 8.3 3o0h:A
61 8k3h:A 480 49 0.0329 0.0250 0.2449 9.1 8k3h:B
62 6qxs:A 292 43 0.0384 0.0479 0.3256 9.6 6qxs:C, 6qya:A, 6qya:C
63 8t7j:A 365 97 0.0712 0.0712 0.2680 9.7 8t7j:B, 8t7j:C, 8t7j:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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