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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MRMDEFYTKVYDAVCEIPYGKVSTYGEIARYVGMPSYARQVGQAMKHLHPETHVPWHRVINSRGTISKRDISAGEQRQKD
RLEEEGVEIYQTSLGEYKLNLPEYMWKP

The query sequence (length=108) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4enj:A 108 108 1.0000 1.0000 1.0000 3.67e-79 4enk:A, 4enm:A, 4enn:A, 4enn:B, 3gx4:X, 3gyh:X, 4hdu:A, 4hdv:A
2 4wx9:A 161 85 0.3056 0.2050 0.3882 1.55e-12
3 7e1p:A 150 87 0.2593 0.1867 0.3218 2.59e-05 7dqq:A
4 1eh6:A 168 78 0.2222 0.1429 0.3077 8.93e-05 1eh7:A, 1eh8:A, 1t38:A, 1t39:A, 1t39:B, 1yfh:C, 1yfh:A, 1yfh:B
5 6ga0:A 154 84 0.2685 0.1883 0.3452 1.91e-04
6 4b9e:A 297 59 0.1574 0.0572 0.2881 1.2 4bau:A, 4bb0:A
7 1h2a:S 267 32 0.1111 0.0449 0.3750 1.5 1h2r:S, 4u9h:S, 4u9i:S, 1ubh:S, 1ubj:S, 1ubk:S, 1ubl:S, 1ubm:S, 1ubo:S, 1ubr:S, 1ubt:S, 1ubu:S, 8w6x:S, 1wuh:S, 1wui:S, 1wuj:S, 1wuk:S, 1wul:S, 5xle:S, 5xlf:S, 5xlg:S, 5xlh:S, 5y4n:S
8 8t5s:A 693 52 0.1667 0.0260 0.3462 1.6
9 4qww:A 529 37 0.1019 0.0208 0.2973 3.0 4qww:B
10 6h0b:B 521 73 0.1852 0.0384 0.2740 3.2
11 3ala:D 711 82 0.2037 0.0309 0.2683 3.8 3ala:A, 3ala:B, 3ala:C, 3ala:E, 3ala:F, 3ala:G, 4btw:A, 4btw:B, 4btx:A, 4btx:B, 4bty:A, 4bty:B, 2c10:A, 2c10:B, 2c10:C, 2c10:D, 2c11:A, 2c11:B, 2c11:C, 2c11:D, 1pu4:A, 1pu4:B, 1us1:A, 1us1:B, 2y73:A, 2y73:B, 2y74:A, 2y74:B
12 3kzy:A 162 46 0.1111 0.0741 0.2609 4.6 3kzy:B, 3kzz:A, 3l00:A, 6y8p:A
13 2bo0:A 336 29 0.1111 0.0357 0.4138 4.7 5b1j:A, 5b1j:B, 5b1k:A, 2bp0:A, 2bp0:B, 2bp8:A, 2bp8:B, 1bq5:A, 4csp:A, 4csp:F, 4csz:A, 1gs6:X, 1gs7:A, 1gs8:A, 1hau:A, 1haw:A, 2jfc:A, 2jfc:B, 2jfc:C, 2jfc:D, 2jfc:E, 2jfc:F, 1ndt:A, 1oe1:A, 1oe2:A, 1oe3:A, 5onx:A, 5ony:A, 2vm3:A, 2vm4:A, 2vmj:A, 2vn3:A, 2vw4:A, 2vw4:B, 2vw6:A, 2vw6:B, 2vw7:A, 2vw7:B, 1wa0:X, 1wa1:X, 1wa2:X, 1wae:A, 2xwz:A, 2xwz:E, 2xwz:D, 2xwz:B, 2xwz:F, 2xwz:C, 2xx0:A, 2xx0:B, 2xx1:A, 2xx1:D, 2xx1:B, 2xx1:C, 2xx1:E, 2xx1:F, 2xxf:A, 2xxf:B, 2xxg:A, 2xxg:C, 2zon:A, 2zon:B, 2zon:C
14 4w5k:A 380 48 0.1296 0.0368 0.2917 5.4 4w5k:B
15 4oan:A 312 44 0.1111 0.0385 0.2727 6.0 4oan:B
16 3bv6:B 354 74 0.1852 0.0565 0.2703 6.7 3bv6:A, 3bv6:C, 3bv6:D, 3bv6:E, 3bv6:F
17 4ru5:C 602 22 0.0833 0.0150 0.4091 7.0 4ru5:A, 4ru5:B
18 6xyu:A 537 38 0.1111 0.0223 0.3158 9.2 6xys:A, 6xyy:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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