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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MRIGIISVGPGNIMNLYRGVKRASENFEDVSIELVESPRNDLYDLLFIPGVGHFGEGMRRLRENDLIDFVRKHVEDERYV
VGVCLGMQLLFEESEEAPGVKGLSLIEGNVVKLRSRRLPHMGWNEVIFKDTFPNGYYYFVHTYRAVCEEEHVLGTTEYDG
EIFPSAVRKGRILGFQFHPEKSSKIGRKLLEKVIECSLSR

The query sequence (length=200) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7ac8:B 202 200 0.9950 0.9851 0.9950 1.95e-145 7ac8:D, 7ac8:F, 3zr4:B, 3zr4:D
2 1ox4:B 538 212 0.3000 0.1115 0.2830 2.88e-23 1jvn:B, 1ox4:A, 1ox5:A, 1ox5:B, 1ox6:B
3 7d54:A 242 168 0.2000 0.1653 0.2381 0.080 7d54:B
4 6und:B 230 82 0.1150 0.1000 0.2805 0.18 8tsn:A, 6und:A, 8vq1:A
5 1i7q:B 192 31 0.0650 0.0677 0.4194 0.50 1i7q:D
6 4yd9:A 1656 43 0.0800 0.0097 0.3721 2.0 4yd9:D, 4yd9:G, 4yd9:J, 4yd9:M, 4yd9:P, 4yd9:S, 4yd9:V, 4yd9:Y, 4yd9:b
7 2rgo:A 557 59 0.0850 0.0305 0.2881 2.1 2rgh:A
8 7e7o:A 2003 42 0.0700 0.0070 0.3333 3.3 7lkp:A
9 7wtb:B 1147 114 0.1350 0.0235 0.2368 3.5 3bg3:A, 3bg3:B, 3bg3:C, 3bg3:D, 3bg9:A, 3bg9:B, 3bg9:C, 3bg9:D, 8j7o:A, 8j7o:B, 8j7o:C, 8j7o:E, 7wta:C, 7wta:B, 7wta:D, 7wta:A, 7wtb:C, 7wtb:A, 7wtb:D, 7wtc:C, 7wtc:A, 7wtc:B, 7wtc:D, 7wtd:C, 7wtd:D, 7wte:C, 7wte:D
10 8hwl:A 941 114 0.1350 0.0287 0.2368 3.8 8hwl:B, 8hwl:C, 8hwl:E
11 4uop:B 409 39 0.0650 0.0318 0.3333 4.4 4uop:A
12 2ywc:A 475 142 0.1850 0.0779 0.2606 7.6 2ywc:B, 2ywc:C, 2ywc:D
13 3bh4:A 483 28 0.0500 0.0207 0.3571 8.5 3bh4:B, 1e3x:A, 1e3z:A, 1e40:A, 1e43:A
14 4jj0:A 181 36 0.0650 0.0718 0.3611 9.0 4jj0:B, 4jj3:A, 4jj3:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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