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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MRIGIISVGPGNIMNLYRGVKRASENFEDVSIELVESPRNDLYDLLFIPGVGHFGEGMRRLRENDLIDFVRKHVEDERYV
VGVALGMQLLFEESEEAPGVKGLSLIEGNVVKLRSRRLPHMGWNEVIFKDTFPNGYYYFVHTYRAVCEEEHVLGTTEYDG
EIFPSAVRKGRILGFQFHPEKSSKIGRKLLEKVIECSL

The query sequence (length=198) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7ac8:B 202 198 1.0000 0.9802 1.0000 6.84e-145 7ac8:D, 7ac8:F, 3zr4:B, 3zr4:D
2 1ox4:B 538 212 0.2980 0.1097 0.2783 5.65e-22 1jvn:B, 1ox4:A, 1ox5:A, 1ox5:B, 1ox6:B
3 2oas:A 427 47 0.0758 0.0351 0.3191 0.77 2oas:B
4 1i7q:B 192 29 0.0657 0.0677 0.4483 1.6 1i7q:D
5 7d54:A 242 168 0.1970 0.1612 0.2321 1.8 7d54:B
6 4yd9:A 1656 43 0.0808 0.0097 0.3721 2.2 4yd9:D, 4yd9:G, 4yd9:J, 4yd9:M, 4yd9:P, 4yd9:S, 4yd9:V, 4yd9:Y, 4yd9:b
7 2rgo:A 557 59 0.0859 0.0305 0.2881 3.6 2rgh:A
8 5j14:A 450 69 0.1111 0.0489 0.3188 3.8 5j14:B, 5j7z:A
9 4uop:B 409 39 0.0657 0.0318 0.3333 4.1 4uop:A
10 5x68:B 354 46 0.0808 0.0452 0.3478 6.6 5x68:A
11 5xrs:G 321 73 0.1061 0.0654 0.2877 7.0 5xrs:A, 5xrs:C
12 4jj0:A 181 36 0.0657 0.0718 0.3611 7.8 4jj0:B, 4jj3:A, 4jj3:B
13 3bh4:A 483 28 0.0505 0.0207 0.3571 8.8 3bh4:B, 1e3x:A, 1e3z:A, 1e40:A, 1e43:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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