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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MRDPSLKILRAGSGFQQLKRMGMPFRGADTYSVKYCEQGRYEYQRYLMINRFPSEYKRHFLRFLGNIRGSKSRDAVPQEA
LHWLLRMIVDNFNPQHVHYIAAMRTLQDSGELDMARDVWKIMERQQTWPDTATICAYLDVCVEAGEKTWAVEAWNRYCTE
LRFLQAGEVDPKPITRTPFSLTREELLYLPKWKKHFDHDPNLDVPDLNRFNRTREVYLRMAKVMLASDDMSMFEHFFDKL
QAAMLTTPTPVPEPPNPHLVRRPRWSPYEHQKSLHHSPWRMDNNGRAMALGPSRTIEGEMQSRFFSNPQFLVHAVKEAVA
VVLQRHMAMFPEATDAQTAAPAFFELTETAQETLAFCDGLVQRMMERLEDKLGSLGTSSLLSTLLCIRRVVGKQSGRALL
EYANQFLAKKATLSADGLRESLTAPNYFQILAAYADESAYHYDPKTRQYTYAPGFRPTETMKGLSATLNEISANQHVAWS
AEMHLQVVRTLVGCGTMKANAYFVENVLRQFKWDSRFLEALYAEYRRHNTVDGWAELTKRALVWTARYNVIASERLKRLI
EDDYDIIHVQTRTFRELAVFQFRDAEEKRHARDVVNELPNPWIDYVTHALPFPDRDAGYPDEYGDIGQWRAPGGPGSPVK
GPGYYAPPMEGEHMRGYTAEWRDPEPWERKYKQYARGQHPSYDMVYAGPMPEIF

The query sequence (length=694) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7ane:ad 694 694 1.0000 1.0000 1.0000 0.0
2 7aor:ad 801 681 0.7478 0.6479 0.7621 0.0
3 7aor:ad 801 26 0.0259 0.0225 0.6923 7.44e-05
4 6hiv:DD 791 683 0.7277 0.6384 0.7394 0.0 6hiw:DD, 6hiy:DD, 7pua:DD, 7pub:DD, 6sga:DD, 6sgb:DD
5 6hiv:DD 791 26 0.0259 0.0228 0.6923 8.65e-05 6hiw:DD, 6hiy:DD, 7pua:DD, 7pub:DD, 6sga:DD, 6sgb:DD
6 6xyw:BG 364 86 0.0317 0.0604 0.2558 0.13
7 5gm6:Y 598 97 0.0403 0.0468 0.2887 0.23
8 5hgr:A 315 76 0.0303 0.0667 0.2763 0.49 5hgr:B
9 5i9h:A 368 79 0.0288 0.0543 0.2532 0.54 5i9d:A
10 5i9h:A 368 79 0.0288 0.0543 0.2532 0.94 5i9d:A
11 5i9h:A 368 78 0.0288 0.0543 0.2564 1.2 5i9d:A
12 5i9h:A 368 79 0.0303 0.0571 0.2658 7.4 5i9d:A
13 6een:A 315 78 0.0274 0.0603 0.2436 0.69 6een:B, 6een:C, 6een:D
14 6een:A 315 78 0.0274 0.0603 0.2436 0.69 6een:B, 6een:C, 6een:D
15 6een:A 315 78 0.0274 0.0603 0.2436 0.73 6een:B, 6een:C, 6een:D
16 6een:A 315 78 0.0274 0.0603 0.2436 0.78 6een:B, 6een:C, 6een:D
17 6een:A 315 78 0.0274 0.0603 0.2436 0.83 6een:B, 6een:C, 6een:D
18 6een:A 315 78 0.0274 0.0603 0.2436 0.88 6een:B, 6een:C, 6een:D
19 6een:A 315 78 0.0274 0.0603 0.2436 0.95 6een:B, 6een:C, 6een:D
20 6eej:A 264 59 0.0317 0.0833 0.3729 0.83 6eej:B, 6eej:C, 6eej:D, 4zbt:A, 4zbt:B, 4zbt:C, 4zbt:D
21 3jwg:A 195 24 0.0173 0.0615 0.5000 0.99
22 5i9f:A 388 77 0.0288 0.0515 0.2597 1.5 5i9g:C
23 5i9f:A 388 77 0.0288 0.0515 0.2597 1.5 5i9g:C
24 5i9f:A 388 77 0.0288 0.0515 0.2597 1.5 5i9g:C
25 5i9f:A 388 77 0.0288 0.0515 0.2597 1.5 5i9g:C
26 5i9f:A 388 77 0.0288 0.0515 0.2597 1.5 5i9g:C
27 5i9f:A 388 77 0.0288 0.0515 0.2597 1.5 5i9g:C
28 5i9f:A 388 77 0.0288 0.0515 0.2597 1.5 5i9g:C
29 5i9f:A 388 77 0.0288 0.0515 0.2597 1.5 5i9g:C
30 8wm6:g 219 69 0.0288 0.0913 0.2899 3.5 8wmv:g, 8wmw:g
31 2at0:X 184 41 0.0187 0.0707 0.3171 3.9 2at3:X, 2at5:X, 2at6:X, 2at8:X, 3c76:X, 3c77:X, 3c78:X, 1d2u:A, 1d3s:A, 1eqd:A, 1erx:A, 3fll:A, 4gnw:A, 4gnw:B, 4grj:A, 4grj:B, 4hpa:A, 4hpb:A, 4hpc:A, 4hpd:A, 5hwz:A, 1ike:A, 1ikj:A, 1koi:A, 1ml7:A, 3mvf:A, 1np4:A, 2ofr:X, 1sxu:A, 1sxw:A, 1sxx:A, 1sxy:A, 1sy0:A, 1sy1:A, 1sy2:A, 1sy3:A, 3tga:A, 3tgb:A, 3tgc:A, 1u0x:A, 1x8n:A, 1x8o:A, 1x8p:A, 1x8q:A, 1ywa:A, 1ywb:A, 1ywc:A, 1ywd:A
32 7zs0:A 278 53 0.0216 0.0540 0.2830 4.8 7zs1:A, 7zs2:A
33 1t90:A 484 71 0.0245 0.0351 0.2394 8.9 1t90:B, 1t90:C, 1t90:D
34 7w1m:E 1226 130 0.0403 0.0228 0.2154 9.9 6wg3:E, 6wge:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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