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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MQYKLILCGKTLKGETTTEAVDAATAECVFKQYANDNGVDGEWTYDDATKTFTVTE

The query sequence (length=56) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2i2y:A 150 56 0.9643 0.3600 0.9643 3.40e-32 9asq:H, 5bmg:A, 5bmg:B, 5bmg:H, 5bmg:D, 5bmg:E, 5bmg:F, 5bmg:G, 5bmh:A, 3v3x:C, 3v3x:D
2 6nl8:A 56 56 0.8571 0.8571 0.8571 1.25e-27 6nla:A
3 5o94:A 56 56 0.8036 0.8036 0.8036 7.58e-27 5ofs:A, 5ofs:B, 5ofs:C, 5ofs:D
4 7rxc:B 439 54 0.8214 0.1048 0.8519 2.90e-25 7rxd:B
5 5lde:B 225 53 0.7679 0.1911 0.8113 4.58e-20 5lde:A
6 6nl6:B 56 56 0.7500 0.7500 0.7500 1.23e-18 6nl6:C, 6nl6:D, 6nl7:B
7 8jxr:C 341 54 0.5536 0.0909 0.5741 1.19e-09
8 7nrr:AAA 329 32 0.2500 0.0426 0.4375 0.71 7nrr:BBB, 7nsw:AAA, 7nsw:BBB, 7ntd:AAA, 7ntd:BBB, 7nte:A, 7nte:B
9 8khn:A 287 22 0.1964 0.0383 0.5000 0.79 8kho:A
10 8izl:A 2067 27 0.1607 0.0044 0.3333 0.94 8izm:A, 8x01:A, 8yxm:A, 8yxp:A
11 4ald:A 363 30 0.1964 0.0303 0.3667 3.9 6ald:A, 6ald:B, 3dft:A, 3dft:B, 3dft:C, 3dft:D, 3lge:A, 3lge:B, 3lge:C, 3lge:D, 2ot0:A, 2ot0:B, 2ot0:C, 2ot0:D, 2ot1:A, 2ot1:B, 2ot1:C, 2ot1:D, 2quv:A, 2quv:B, 2quv:D, 5tle:A, 5tle:B, 5tle:C, 5tle:D, 5tlh:A, 5tlh:B, 5tlh:C, 5tlh:D, 5tlw:A, 5tlw:B, 5tlw:C, 5tlw:D, 5tlz:A, 5tlz:B, 5tlz:C, 5tlz:D, 3tu9:A, 3tu9:B, 3tu9:C, 3tu9:D, 6xmh:A, 6xmh:B, 6xml:A, 6xml:B, 6xmm:A, 6xmm:B, 6xmo:A, 6xmo:B, 1zai:A, 1zai:B, 1zai:C, 1zai:D, 1zaj:A, 1zaj:B, 1zaj:C, 1zaj:D, 1zal:A, 1zal:B, 1zal:C, 1zal:D
12 6m9g:A 280 37 0.2679 0.0536 0.4054 4.4 6eg7:A, 6eg7:B, 6m9g:B
13 4l9o:A 330 14 0.1607 0.0273 0.6429 6.5 4l9o:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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