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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MQRVTITLDDDLLETLDSLSQRRGYNNRSEAIRDILRSALAQEATQQHGTQGFAVLSYVYEHEKRDLASRIVSTQHHHHD
LSVATLHVHINHDDCLEIAVLKGDMGDVQHFADDVIAQRGVRHGHLQCLPK

The query sequence (length=131) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3od2:A 132 131 1.0000 0.9924 1.0000 2.02e-93 3bkt:A, 3bkt:B, 3bkt:C, 3bkt:D, 2hza:A, 2hza:B, 2hzv:A, 2hzv:B, 2hzv:C, 2hzv:D, 2hzv:E, 2hzv:F, 2hzv:G, 2hzv:H, 3od2:B, 1q5y:A, 1q5y:C, 1q5y:B, 1q5y:D
2 3bkf:A 66 83 0.5038 1.0000 0.7952 5.07e-40
3 2bj7:B 138 124 0.3130 0.2971 0.3306 9.06e-25 2bj1:A, 2bj1:B, 2bj7:A, 2bj8:A, 2bj8:B, 2bj9:A, 2bj9:B
4 6mrj:B 142 127 0.2901 0.2676 0.2992 5.07e-18 2cad:A, 2cad:B, 3lgh:A, 3lgh:B, 3lgh:C, 3lgh:D, 6mrj:A, 6mrj:C, 6mrj:D, 3pht:A, 3pht:B, 3qsi:B, 3qsi:C, 3qsi:D, 3qsi:A, 3qsi:F, 3qsi:G, 3qsi:H, 3qsi:E, 3qsi:I, 2wvf:B, 2y3y:A, 2y3y:B, 2y3y:C, 2y3y:D
5 3gxq:B 54 39 0.0916 0.2222 0.3077 1.2 3gxq:A
6 5a60:A 429 31 0.0916 0.0280 0.3871 2.5 5a61:A
7 2w57:A 131 48 0.1450 0.1450 0.3958 2.9 2w57:B
8 1ea4:F 45 23 0.0687 0.2000 0.3913 3.0 1b01:A, 1b01:B, 1ea4:H, 1ea4:J, 1ea4:K, 1ea4:L, 1ea4:D, 1ea4:E, 1ea4:G, 1ea4:B, 1ea4:A
9 7sf2:A 586 47 0.1145 0.0256 0.3191 8.8 7sf2:B, 7sf2:C, 7sf2:D, 7sf2:E, 7sf2:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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