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BioLiP
>protein
MQRVHTITAVTEDGESLRFECRSDEDVITAALRQNIFLMSSCREGGCATCKALCSEGDYDLKGCSVQALPPEEEEEGLVL
LCRTYPKTDLEIELPYTH

The query sequence (length=98) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1jq4:A 98 98 1.0000 1.0000 1.0000 4.19e-69
2 1iue:A 98 90 0.3878 0.3878 0.4222 8.89e-14 1iue:B
3 1krh:A 337 93 0.3571 0.1039 0.3763 1.51e-12 1krh:B
4 6iri:A 107 89 0.3265 0.2991 0.3596 2.88e-10
5 5auk:A 96 89 0.3367 0.3438 0.3708 6.31e-10 1dox:A, 1doy:A, 2kaj:A, 1off:A, 2pvg:C, 2pvo:D
6 5h57:A 97 95 0.3367 0.3402 0.3474 8.62e-10 5h57:B, 5h57:C, 5h57:D, 5h57:E, 5h57:F, 5h5j:B
7 6khi:1 98 88 0.3061 0.3061 0.3409 2.13e-09 5aui:A, 7fix:R1, 7fix:R2, 7fix:R3, 6jo2:A, 6l7o:R, 1roe:A, 5zf0:P1, 5zf0:P2, 5zf0:P3, 5zf0:P4, 5zf0:P6, 5zf0:P5
8 1pfd:A 96 89 0.3061 0.3125 0.3371 3.85e-09
9 4zho:A 97 89 0.3367 0.3402 0.3708 4.48e-09 4zho:B
10 5ogx:A 333 75 0.2551 0.0751 0.3333 4.65e-09
11 6yac:N 97 89 0.3367 0.3402 0.3708 5.32e-09 6yez:N
12 6xtf:D 96 89 0.3265 0.3333 0.3596 9.82e-09 6xtf:C
13 1a70:A 97 90 0.3061 0.3093 0.3333 1.18e-08
14 4zhp:A 98 89 0.2959 0.2959 0.3258 5.02e-08
15 7y5e:NN 99 79 0.2857 0.2828 0.3544 6.01e-08 7y5e:N2, 7y7a:N7, 7y7a:No
16 7s3d:X 97 71 0.2857 0.2887 0.3944 1.01e-07 7s3d:W, 7s3d:x
17 3ab5:A 97 82 0.2551 0.2577 0.3049 1.60e-07 3ab5:B, 3wcq:A
18 4n58:A 266 77 0.2755 0.1015 0.3506 3.08e-07 4n58:B, 4n59:A, 4n59:B
19 3b2g:A 98 87 0.3061 0.3061 0.3448 4.96e-07 3b2g:B
20 1czp:A 98 88 0.3061 0.3061 0.3409 7.05e-07 1czp:B, 1ewy:C, 1fxa:A, 1fxa:B, 1j7a:A, 1j7b:A, 1j7c:A, 1qoa:A, 1qoa:B, 1qob:A, 1qob:B, 1qof:A, 1qof:B, 1qog:A, 1qog:B, 1qt9:A
21 8jc1:A 267 74 0.2551 0.0936 0.3378 7.85e-07 8jc1:B, 8jc1:C, 8jc1:D
22 6vjv:A 96 86 0.2755 0.2812 0.3140 1.42e-06 6vjv:B
23 4fxc:A 98 91 0.2857 0.2857 0.3077 2.68e-06
24 4wqm:A 326 76 0.2347 0.0706 0.3026 3.44e-06
25 1rfk:B 97 90 0.3061 0.3093 0.3333 4.87e-06 3p63:A, 3p63:B, 1rfk:A
26 1awd:A 94 88 0.2857 0.2979 0.3182 4.91e-06
27 4itk:A 104 90 0.2959 0.2788 0.3222 2.46e-05
28 3zyy:X 628 53 0.2347 0.0366 0.4340 3.63e-05 4c1n:J, 4c1n:I, 4c1n:K, 4c1n:X, 3zyy:Y
29 1gaq:B 98 89 0.2653 0.2653 0.2921 4.28e-05 3b2f:A, 3b2f:B, 5h8y:E, 5h8y:F, 5h92:C, 3w5u:B, 3w5u:D, 3w5u:F, 3w5u:H, 3w5v:B, 3w5v:D
30 7akt:A 107 89 0.2755 0.2523 0.3034 6.90e-05 6kum:A, 6kum:B, 6kv0:A, 6kv0:B, 6lk1:A, 6lk1:B, 2mh7:A, 2n0s:B, 7wzn:G
31 1doi:A 128 80 0.2857 0.2188 0.3500 1.38e-04
32 3av8:A 97 90 0.2959 0.2990 0.3222 3.20e-04 3av8:B, 3av8:C, 3av8:D, 1fxi:A, 1fxi:B, 1fxi:C, 1fxi:D
33 1e0z:A 128 87 0.3061 0.2344 0.3448 4.86e-04 1e10:A
34 7c3b:B 306 75 0.2347 0.0752 0.3067 0.001
35 1frr:A 95 67 0.2449 0.2526 0.3582 0.001 1frr:B
36 7c3b:C 334 75 0.2347 0.0689 0.3067 0.002 7c3a:A, 7c3a:B, 7c3a:C, 7c3b:A
37 1wri:A 93 89 0.2857 0.3011 0.3146 0.003
38 8c6j:S 635 45 0.1531 0.0236 0.3333 0.49 7abi:O, 8ch6:X, 6ff4:O, 8i0r:J, 8i0s:J, 8i0t:J, 5mqf:O, 7qtt:X, 6zym:O
39 6laa:A 753 46 0.1531 0.0199 0.3261 0.52 6gii:A, 6ldl:A
40 2pia:A 321 71 0.1939 0.0592 0.2676 0.63
41 2b5o:A 292 46 0.1735 0.0582 0.3696 2.0 2b5o:B
42 1cr6:B 541 24 0.1122 0.0203 0.4583 2.5 1cr6:A, 1ek1:A, 1ek1:B, 1ek2:A, 1ek2:B
43 6kbh:A 765 58 0.1633 0.0209 0.2759 2.6
44 3wqm:A 294 78 0.2347 0.0782 0.2949 3.1 4cmx:A, 4cmx:B, 4kt8:A, 3wqk:A, 3wql:A, 3wql:B, 3wql:C, 3wql:D, 3wqn:A
45 5mza:A 440 25 0.1122 0.0250 0.4400 4.5
46 4wuu:E 223 44 0.1531 0.0673 0.3409 6.1
47 9b0e:A 821 78 0.2347 0.0280 0.2949 9.1 9aym:A, 9aym:B, 9b0e:B, 9b0i:A, 9b0i:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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