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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFREIAK
KLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRLKLVKRV
WEDVGGVVEYMSPELHDYVFGVVSHLPHAVAFALVDTLIHMSTPEVDLFKYPGGGFKDFTRIAKSDPIMWRDIFLENKEN
VMKAIEGFEKSLNHLKELIVREAEEELVEYLKEVKIKR

The query sequence (length=278) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3ggg:D 293 278 1.0000 0.9488 1.0000 0.0 2g5c:A, 2g5c:B, 2g5c:C, 2g5c:D, 3ggg:A, 3ggg:B, 3ggg:C, 3ggo:A, 3ggo:B, 3ggo:D, 3ggo:C, 3ggp:A, 3ggp:B, 3ggp:D, 3ggp:C
2 4wji:A 293 261 0.3453 0.3276 0.3678 1.96e-55
3 5uyy:A 373 244 0.3094 0.2306 0.3525 3.33e-44 7mqv:A, 7mqv:B, 7mqv:C, 7mqv:D, 6u60:A, 6u60:B, 5uyy:B, 5uyy:C, 5uyy:D
4 3b1f:A 286 281 0.3058 0.2972 0.3025 5.18e-34
5 2f1k:A 279 277 0.2806 0.2796 0.2816 6.84e-33 2f1k:B, 2f1k:C, 2f1k:D
6 2pv7:B 280 255 0.1835 0.1821 0.2000 2.60e-05 2pv7:A
7 4om8:A 309 42 0.0540 0.0485 0.3571 0.020 4om8:B
8 3adp:A 310 42 0.0647 0.0581 0.4286 0.065
9 3pdu:A 287 148 0.1331 0.1289 0.2500 0.13 3pdu:B, 3pdu:C, 3pdu:D, 3pdu:F, 3pdu:E, 3pdu:G, 3pdu:H
10 8j44:A 293 106 0.1007 0.0956 0.2642 0.32 8j44:B, 8whg:B, 8whg:E, 8whg:F
11 2rg4:A 206 70 0.0755 0.1019 0.3000 0.33 2rg4:B
12 6smz:C 295 114 0.1007 0.0949 0.2456 0.51 6smy:A, 6smy:B, 6smy:C, 6smy:D, 6smz:A, 6smz:B, 6smz:D
13 5je8:B 294 72 0.0863 0.0816 0.3333 0.53 5je8:A, 5je8:C, 5je8:D
14 3pef:A 287 71 0.0755 0.0732 0.2958 0.63 3pef:B, 3pef:C, 3pef:D, 3pef:E, 3pef:F, 3pef:G, 3pef:H
15 1gpj:A 399 45 0.0576 0.0401 0.3556 1.0
16 3wsw:A 316 45 0.0576 0.0506 0.3556 1.8 3wsw:B, 3wsw:C, 3wsw:D
17 1q1w:A 422 27 0.0504 0.0332 0.5185 2.4 3lb8:A, 3lb8:B, 1q1r:A, 1q1r:B, 1q1w:B
18 4usr:A 357 48 0.0612 0.0476 0.3542 2.6
19 4u68:A 64 24 0.0468 0.2031 0.5417 2.7 4quf:A, 4quf:B, 4quf:C, 4quf:D, 4quf:E, 4quf:F, 4u68:B, 4u68:C
20 3f3s:A 312 41 0.0576 0.0513 0.3902 3.0 3f3s:B
21 7oar:B 413 26 0.0432 0.0291 0.4615 3.2
22 7oar:A 442 26 0.0432 0.0271 0.4615 3.4 7bil:A, 7bil:B, 6s3h:A, 6s3h:B, 6s3i:A, 6s3m:A, 6s3m:B, 6s3n:A, 6s3n:B, 6s3o:A, 6s3p:A
23 4q3a:C 260 48 0.0647 0.0692 0.3750 3.9 4j43:A, 4j43:B, 4j49:A, 4j49:B, 4j4b:A, 4j4b:B, 4j4h:A, 4j4h:B, 4j4h:C, 4j4h:D, 4jk3:A, 4jk3:B, 4q39:A, 4q39:B, 4q3a:A, 4q3a:B, 4q3a:D, 4q3b:A, 4q3b:B, 4q3b:C, 4q3b:D, 4q3c:A, 4q3c:B, 4q3c:C, 4q3c:D, 4q3d:A, 4q3d:B, 4q3d:C, 4q3d:D, 4q3e:A, 4q3e:B
24 4j7c:B 217 35 0.0468 0.0599 0.3714 4.4 2hms:A, 2hms:B, 2hms:C, 2hms:D, 2hmt:A, 2hmt:B, 2hmu:A, 2hmu:B, 2hmv:A, 2hmv:B, 2hmw:A, 2hmw:B, 4j7c:A, 4j7c:C, 4j7c:D, 4j7c:E, 4j7c:F, 4j7c:G, 4j7c:H, 4j90:A, 4j90:B, 4j91:A, 4j91:B, 4j91:C, 4j91:D, 8k16:A, 8k16:B, 8k1k:A, 8k1k:B, 8k1s:A, 8k1s:B, 8k1s:C, 8k1s:D, 8k1s:E, 8k1s:F, 8k1s:G, 8k1s:H, 8k1t:A, 8k1t:B, 8k1t:C, 8k1t:D, 8k1t:E, 8k1t:F, 8k1t:G, 8k1t:H, 8k1u:A, 8k1u:B, 8k1u:C, 8k1u:D, 8k1u:E, 8k1u:F, 8k1u:G, 8k1u:H, 1lsu:A, 1lsu:B, 6s2j:A, 6s2j:B, 6s5b:A, 6s5b:B, 6s5b:C, 6s5b:D, 6s5b:E, 6s5b:F, 6s5b:G, 6s5b:H, 6s5c:A, 6s5c:B, 6s5d:A, 6s5d:B, 6s5e:A, 6s5e:B, 6s5e:C, 6s5e:D, 6s5e:E, 6s5e:F, 6s5e:G, 6s5e:H, 6s5g:A, 6s5g:B, 6s5g:C, 6s5g:D, 6s5g:E, 6s5g:F, 6s5g:G, 6s5g:H, 6s5n:A, 6s5n:B, 6s5n:C, 6s5n:D, 6s5n:E, 6s5n:F, 6s5n:G, 6s5n:H, 6s5o:A, 6s5o:B, 6s5o:C, 6s5o:D, 6s5o:E, 6s5o:F, 6s5o:G, 6s5o:H, 6s7r:A, 6s7r:B, 6s7r:C, 6s7r:D, 6s7r:E, 6s7r:F, 6s7r:G, 6s7r:H, 6s7r:I, 6s7r:J, 6s7r:K, 6s7r:L, 6s7r:M, 6s7r:N, 6s7r:O, 6s7r:P, 8xmh:A, 8xmh:B, 8xmh:C, 8xmh:D, 8xmh:E, 8xmh:F, 8xmh:G, 8xmh:H, 8xmi:A, 8xmi:B, 8xmi:C, 8xmi:D, 8xmi:E, 8xmi:F, 8xmi:G, 8xmi:H
25 1lkx:C 679 113 0.1079 0.0442 0.2655 4.4 1lkx:A, 1lkx:B, 1lkx:D
26 7e7l:A 770 61 0.0504 0.0182 0.2295 4.8 7e7l:B
27 6ns4:A 685 131 0.1115 0.0453 0.2366 5.5 6ns3:A, 6ns4:B, 6ns5:A, 6ns5:B, 6ns6:A, 6ns6:B
28 1lss:A 132 60 0.0719 0.1515 0.3333 6.1 1lss:B, 1lss:C, 1lss:D
29 1bw9:A 350 98 0.1079 0.0857 0.3061 7.5 1bw9:B, 1bxg:A, 1bxg:B, 1c1d:A, 1c1d:B, 1c1x:A, 1c1x:B
30 2rfk:A 334 140 0.1331 0.1108 0.2643 7.5 3hax:A, 3hay:A, 3hjw:A, 3hjy:A, 2hvy:A, 3lwo:A, 3lwp:A, 3lwq:A, 3lwr:A, 3lwv:A, 3mqk:A
31 3d1l:B 259 65 0.0540 0.0579 0.2308 8.6
32 3pqd:B 312 37 0.0432 0.0385 0.3243 9.2 3pqd:A, 3pqd:C, 3pqd:D, 3pqd:F, 3pqd:H, 3pqd:E, 3pqd:G, 3pqf:C, 3pqf:D
33 3atq:A 452 24 0.0468 0.0288 0.5417 9.6 3atr:A, 4opc:A, 4opd:A, 4opd:B, 4opg:A, 4opi:A, 4opl:A, 4opt:A, 4opu:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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