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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MQKQAELYRGKAKTVYSTENPDLLVLEFRNDTSAGDGARIEQFDRKGMVNNKFNYFIMSKLAEAGIPTQMERLLSDTECL
VKKLDMVPVECVVRNRAAGSLVKRLGIEEGIELNPPLFDLFLKNDAMHDPMVNESYCETFGWVSKENLARMKELTYKAND
VLKKLFDDAGLILVDFKLEFGLYKGEVVLGDEFSPDGSRLWDKETLEKMDKDRFRQSLGGLIEAYEAVARRLGVQLD

The query sequence (length=237) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2gqr:A 237 237 1.0000 1.0000 1.0000 1.18e-176 2gqr:B, 2gqs:A, 2gqs:B
2 3nua:B 237 226 0.4177 0.4177 0.4381 5.04e-68 3nua:A
3 2ywv:A 237 232 0.4304 0.4304 0.4397 6.72e-64 2ywv:B
4 4fe2:B 235 233 0.4262 0.4298 0.4335 3.80e-63 4fe2:A, 4fgr:A, 4fgr:B, 4nye:A, 4nye:B
5 2z02:A 242 233 0.4262 0.4174 0.4335 5.25e-61 2yzl:A, 2z02:B
6 4o7n:A 233 228 0.4135 0.4206 0.4298 8.16e-58 4o7l:A, 4o7r:A, 4o7s:A, 4o7t:A, 4o7v:A, 4o7w:A, 4o7y:A, 4o7z:A, 4o81:A, 4o81:B, 4o82:A, 4o82:B, 4o83:A, 4o83:B, 4o84:A, 4o84:B, 4o86:A, 3u54:A, 3u54:B
7 7ale:A 419 221 0.2996 0.1695 0.3213 8.93e-29 7ale:B, 6yb8:A, 6yb8:B, 6yb9:A, 6yb9:B
8 6yx3:A 297 239 0.2954 0.2357 0.2929 2.44e-13 6yy6:A, 6yy7:A, 6yy8:A, 6yy9:A, 6yya:A, 6yyb:A, 6yyc:A, 6yyd:A, 6z0q:A, 6z0r:A
9 1obg:A 305 164 0.2068 0.1607 0.2988 7.30e-10 2cnq:A, 2cnu:A, 2cnv:A, 1obd:A
10 4dzh:A 439 50 0.0759 0.0410 0.3600 1.3
11 5eks:A 355 43 0.0549 0.0366 0.3023 2.5 5eks:B
12 8qma:J 426 45 0.0464 0.0258 0.2444 4.0 8r5o:L, 8r6s:L, 8ras:L, 8rdj:L
13 7q0s:A 620 32 0.0549 0.0210 0.4062 4.0 8cvx:A, 8cvx:B, 8cvx:D, 8cvx:C, 7q0s:B, 7q0s:C, 7q0s:D, 7q12:A, 7q12:B, 7q12:C, 7q12:D, 7q13:A, 7q13:C, 7q13:B, 7q13:D
14 4dnj:A 399 119 0.1181 0.0702 0.2353 5.0 2fr7:A
15 7pul:A 347 152 0.1266 0.0865 0.1974 5.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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