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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MQHASVIAQFVVEEFLPDVAPADVDVDLDLVDNGVIDSLGLLKVIAWLEDRFGIAADDVELSPEHFRSIRSIDAFVVGAT
TPPVEAKLQ

The query sequence (length=89) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2my5:A 89 89 1.0000 1.0000 1.0000 7.28e-59 5wpx:A, 5wpy:A
2 2lki:A 83 41 0.1685 0.1807 0.3659 0.011
3 9cer:P 609 42 0.1685 0.0246 0.3571 0.10 9ces:P, 9cet:P
4 4bph:A 85 28 0.1011 0.1059 0.3214 2.3
5 4qyz:K 152 30 0.1348 0.0789 0.4000 2.3
6 2koo:A 81 50 0.1461 0.1605 0.2600 5.1 2kop:A, 2koq:A, 2kor:A, 2kos:A
7 6bxn:A 294 50 0.1910 0.0578 0.3400 5.9
8 6lbp:A 460 33 0.1348 0.0261 0.3636 6.5 6lbp:B
9 6c75:A 378 34 0.1573 0.0370 0.4118 6.7 6c75:B, 6c76:A, 6c7l:A
10 8hfr:xI 65 18 0.1124 0.1538 0.5556 8.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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