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BioLiP
>protein
MQGKVALEEHFAIPETLQDSAGFVPGDYWKELQHRLLDIQDTRLKLMDAHGIETMILSLNAPAVQAIPDRRKAIEIARRA
NDVLAEECAKRPDRFLAFAALPLQDPDAATEELQRCVNDLGFVGALVNGFSQEGDGQTPLYYDLPQYRPFWGEVEKLDVP
FYLHPRNPLPQDSRIYDGHPWLLGPTWAFAQETAVHALRLMASGLFDEHPRLNIILGHMGEGLPYMMWRIDHRNAWVKLP
PRYPAKRRFMDYFNENFHITTSGNFRTQTLIDAILEIGADRILFSTDWPFENIDHASDWFNATSIAEADRVKIGRTNARR
LFKLD

The query sequence (length=325) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2dvt:A 325 325 1.0000 1.0000 1.0000 0.0 2dvt:B, 2dvt:C, 2dvt:D, 2dvu:A, 2dvu:B, 2dvu:C, 2dvu:D, 2dvx:A, 2dvx:B, 2dvx:C, 2dvx:D
2 4qro:A 332 325 0.7600 0.7440 0.7600 0.0 4qro:B, 4qro:C, 4qro:D, 4qro:E, 4qro:F, 4qro:G, 4qro:H
3 6m53:B 339 329 0.4554 0.4366 0.4498 1.35e-91 7bp1:A, 7bp1:C, 7bp1:D, 7bpc:A, 7bpc:C, 6m53:A, 6m53:C, 6m53:D
4 7a19:A 339 334 0.4431 0.4248 0.4311 2.24e-87 7a19:B, 7a1a:A, 7a1a:B, 7wjr:A, 7wjr:B, 7wjr:C, 7wjr:D, 7wkl:A, 7wkl:B, 7wkl:C, 7wkl:D, 7wkm:A, 7wkm:B, 7wmb:A, 7wmb:B
5 8h41:B 357 345 0.4338 0.3950 0.4087 1.16e-79 8h41:A, 6jqw:A, 6jqw:B, 6jqx:A, 6jqx:B
6 4icm:A 335 291 0.2954 0.2866 0.3299 1.11e-51 4icm:B, 4icm:C, 4icm:D, 4icm:E, 4icm:F, 4icm:G, 4icm:H, 4l6d:A, 4l6d:B, 4l6d:C, 4l6d:D, 4l6d:E, 4l6d:F, 4l6d:G, 4l6d:H, 4ng3:A, 4ng3:B, 4ng3:C, 4ng3:D, 4ng3:E, 4ng3:F, 4ng3:G, 4ng3:H, 4ni8:A, 4ni8:B, 4ni8:C, 4ni8:D, 4ni8:E, 4ni8:F, 4ni8:G, 4ni8:H
7 3nur:A 305 337 0.3262 0.3475 0.3145 2.69e-51
8 4qrn:A 352 308 0.3138 0.2898 0.3312 6.00e-51 4inf:A, 4inf:B, 4inf:C, 4inf:D, 4qrn:B, 4qrn:C, 4qrn:D, 4qs5:A, 4qs5:B, 4qs5:C, 4qs5:D, 4qs6:A, 4qs6:B, 4qtg:A, 4qtg:B
9 7pwy:C 301 274 0.1938 0.2093 0.2299 9.04e-23
10 4ofc:A 335 258 0.2031 0.1970 0.2558 5.32e-22 4igm:A, 4igm:B, 4igm:C, 4igm:D, 4igm:E, 4igm:F, 4ign:A, 4ign:B, 4ign:C, 4ign:D, 4ign:E, 4ign:F, 4ih3:A, 4ih3:B, 4ih3:C, 4ih3:D, 4ih3:E, 4ih3:F, 4ofc:B, 4ofc:C, 4ofc:D, 4ofc:E, 4ofc:F, 7pwy:A, 7pwy:B, 7pwy:D, 2wm1:A
11 4hjw:C 378 308 0.2585 0.2222 0.2727 9.57e-20 4hjw:A, 4hjw:B
12 4hk5:D 380 309 0.2831 0.2421 0.2977 1.00e-19 4hk5:A, 4hk5:B, 4hk5:C, 4hk6:A, 4hk6:B, 4hk6:C, 4hk6:D, 4hk7:A, 4hk7:B, 4hk7:C, 4hk7:D, 4lak:A, 4lak:B, 4lal:A, 4lal:B, 4lal:C, 4lal:D, 4lam:A, 4lam:B, 4lao:A, 4lao:B
13 4era:A 332 289 0.2277 0.2229 0.2561 1.32e-17 4epk:A, 4epk:B, 4era:B, 4erg:A, 4erg:B, 4eri:A, 4eri:B, 2hbv:A, 2hbv:B, 2hbx:A, 2hbx:B, 4ifk:A, 4ifk:B, 4ifo:A, 4ifo:B, 4ifr:A, 4ifr:B, 4ig2:A, 4ig2:B, 7k12:A, 7k13:A, 7k13:B, 7k13:C, 6mgs:A, 6mgs:B, 6mgs:C, 6mgt:A, 6mgt:B
14 3ij6:A 303 274 0.2215 0.2376 0.2628 3.42e-17 3ij6:B, 3ij6:C, 3ij6:D
15 6dxs:A 342 297 0.2462 0.2339 0.2694 3.64e-14 6dwv:B, 6dwv:A, 6dwv:C, 6dwv:D, 6dxq:A, 6dxq:B, 6dxq:C, 6dxq:D, 6dxs:B, 6dxs:C, 6dxs:D
16 5vn5:C 334 301 0.2185 0.2126 0.2359 9.25e-14 6e6i:A, 6e6i:B, 6e6i:C, 6e6i:D, 6e6i:E, 6e6i:F, 6e6i:G, 6e6i:H, 6e6i:I, 5vn5:A, 5vn5:B
17 6m1w:A 354 276 0.2308 0.2119 0.2717 1.44e-12 8ful:A, 8ful:C, 8ful:E, 8ful:G, 8fum:A, 8fum:C, 8fum:E, 8fum:G, 8fun:A, 8fun:C, 8fuo:A, 8fuo:C, 6m2i:A
18 8sm9:F 344 252 0.2154 0.2035 0.2778 1.84e-10 8sm9:B, 8sm9:D, 8sm9:H
19 8fun:D 370 328 0.2462 0.2162 0.2439 1.11e-09 8ful:B, 8ful:D, 8ful:F, 8ful:H, 8fum:B, 8fum:D, 8fum:F, 8fum:H, 8fun:B, 8fuo:B, 8fuo:D, 6m2i:B
20 8sm7:A 347 297 0.2154 0.2017 0.2357 1.29e-09 8sm7:B, 8sm7:D, 8sm7:G
21 6m1w:B 346 295 0.2277 0.2139 0.2508 3.95e-08
22 2gwg:A 329 198 0.1600 0.1581 0.2626 5.36e-08 2gwg:B
23 8sm8:J 345 259 0.2000 0.1884 0.2510 4.58e-07 8sm8:G, 8sm8:A, 8sm8:D
24 2f6k:A 306 262 0.1692 0.1797 0.2099 1.57e-06 2f6k:B
25 6omp:A 356 265 0.1815 0.1657 0.2226 0.022 6omp:B, 6omq:A, 6omq:B, 6omr:A, 6omr:B
26 2dcm:A 662 61 0.0615 0.0302 0.3279 1.6 2eep:A, 2z3z:A
27 6b58:C 544 109 0.0831 0.0496 0.2477 2.0 6b58:A
28 7ed1:A 223 57 0.0523 0.0762 0.2982 4.1 7ed1:B, 7ed2:A, 7ed2:B
29 2xhs:A 243 50 0.0585 0.0782 0.3800 4.5
30 1f4o:B 165 31 0.0369 0.0727 0.3871 4.6 1k94:A, 1k94:B
31 2y5s:B 281 79 0.0646 0.0747 0.2658 5.4 2y5s:A
32 7tbl:e 313 33 0.0369 0.0383 0.3636 8.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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