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BioLiP
>protein
MQARKLAVDGAIEFTPRVFADDRGLLILPYQEEAFVEAHGGPLFRVAQTIHSMSKRGVVRGIHYTVTPPGTAKYVYCARG
KAMDIVIDIRVGSPTFGQWDSVLMDQQDPRAVYLPVGVGHAFVALEDDTVMSYMLSRSYVTQDELALSALDPALGLPIDI
GVEPIVSDRDRVAITLAEAQRQGLLPDYTTSQEIERRLTAVP

The query sequence (length=202) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1oi6:A 202 202 1.0000 1.0000 1.0000 8.85e-148 1oi6:B
2 2ixc:A 198 196 0.4109 0.4192 0.4235 5.92e-50 2ixc:B, 2ixc:C, 2ixc:D
3 4hn1:C 201 183 0.4059 0.4080 0.4481 2.72e-49 4hmz:A, 4hmz:B, 4hmz:C, 4hmz:D, 4hn1:A, 4hn1:B, 4hn1:D
4 7pwh:AAA 203 198 0.4307 0.4286 0.4394 2.37e-48
5 2ixh:A 184 179 0.3168 0.3478 0.3575 1.60e-35 2ixh:B, 2ixi:B, 2ixi:A, 2ixk:A, 2ixk:B
6 1epz:A 183 176 0.2871 0.3169 0.3295 1.30e-29
7 1dzt:A 183 175 0.2871 0.3169 0.3314 6.37e-29 1dzt:B
8 7pvi:AAA 199 183 0.2822 0.2864 0.3115 1.56e-28 7pvi:BBB, 7pwb:AAA, 7pwb:BBB
9 6ndr:A 188 175 0.2772 0.2979 0.3200 1.47e-25 6ndr:B
10 5buv:A 174 167 0.2277 0.2644 0.2754 2.78e-24 5buv:B
11 3ryk:A 175 157 0.2228 0.2571 0.2866 8.41e-23 3ryk:B
12 6c46:A 183 159 0.2525 0.2787 0.3208 2.50e-21 6c46:D
13 8dcl:A 185 177 0.2475 0.2703 0.2825 1.83e-11 7anj:A, 7anj:B, 8dak:A, 8dak:B, 8dcl:B
14 8dco:B 181 174 0.2327 0.2597 0.2701 5.76e-11 8db5:A, 8db5:B, 8db5:C, 8db5:D, 8db5:E, 8db5:F, 8db5:G, 8db5:H, 8dco:A
15 7m15:D 181 177 0.2426 0.2707 0.2768 2.42e-10 7an4:A, 7an4:B, 7an4:D, 7m14:A, 7m14:B, 7m14:C, 7m14:D, 7m14:E, 7m14:F, 7m15:A, 7m15:B, 7m15:C, 7m15:E, 7m15:F
16 2ixl:C 197 173 0.2376 0.2437 0.2775 4.21e-08 2ixl:A, 2ixl:B, 2ixl:D, 1nyw:A, 1nyw:B, 1nzc:A, 1nzc:B, 1nzc:C, 1nzc:D
17 7e7l:A 770 63 0.0891 0.0234 0.2857 3.5 7e7l:B
18 5tky:A 597 40 0.0693 0.0235 0.3500 6.2 5tky:B
19 5t2k:B 243 118 0.1436 0.1193 0.2458 7.3 5t2k:A, 5t2k:C, 5t2k:D, 5t2k:E
20 7dfz:A 897 29 0.0594 0.0134 0.4138 8.3
21 7df8:A 918 29 0.0594 0.0131 0.4138 8.4
22 7dfw:A 957 29 0.0594 0.0125 0.4138 8.7 7n4u:A, 7n4u:B, 7n4v:A, 7n4v:B, 7n4x:A
23 8htu:1 193 30 0.0594 0.0622 0.4000 8.8 8htu:5, 7ksq:1, 7kux:1, 6l35:6, 7xqp:1, 7xqp:5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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