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BioLiP
>protein
MPTLDALTPIFRQVFDDDSIVLTRETSANDIDAWDSLSHMNLIVSLEVHYKIKFALGELQKLKNVGDLADLVDKKLARKL
EHHHHHH

The query sequence (length=87) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2lml:A 87 87 1.0000 1.0000 1.0000 1.95e-59
2 6lvu:A 78 55 0.1954 0.2179 0.3091 0.012 6lvu:B
3 4tr0:A 92 20 0.1494 0.1413 0.6500 0.071 4tr0:B, 4tr1:A, 4tr1:B
4 8jfh:E 79 44 0.1954 0.2152 0.3864 0.24 8jfn:B
5 2koo:A 81 33 0.1379 0.1481 0.3636 0.35 2kop:A, 2koq:A, 2kor:A, 2kos:A
6 8iu7:B 323 72 0.2299 0.0619 0.2778 0.64 8iu7:A, 8iu7:C, 8iu7:D
7 2eht:A 77 45 0.1379 0.1558 0.2667 2.5
8 8d3i:A 439 33 0.1609 0.0319 0.4242 2.5 4bur:D, 8d3e:A, 8d3e:B, 8d3g:A, 8d3g:B, 8d3h:A, 8d3h:B, 8d3i:B, 8d3j:A, 8d3j:B, 8d3k:A, 8d3k:B, 8d3n:A, 8d3n:B, 8d3o:A, 8d3o:B, 3gd4:B, 5kvh:A, 5kvh:B, 8qns:D, 8qns:J
9 5fs9:B 465 33 0.1609 0.0301 0.4242 2.5 4bur:A, 4bur:B, 4bur:C, 4fdc:B, 5fs6:A, 5fs6:B, 5fs7:A, 5fs7:B, 5fs9:A, 3gd3:A, 3gd4:A, 1m6i:A, 5miu:A, 5miu:B, 5miv:A, 5miv:C, 8qns:A, 8qns:G
10 1gv4:A 490 33 0.1609 0.0286 0.4242 2.5 4bv6:A, 5fmh:A, 5fs8:A, 3gd3:B, 3gd3:C, 3gd3:D, 1gv4:B, 5kvi:A, 4lii:A
11 2dyr:E 105 43 0.1494 0.1238 0.3023 3.0 2dyr:R, 2dys:E, 2dys:R
12 4uy7:A 327 11 0.1034 0.0275 0.8182 3.1 6fnq:A, 6fnq:B, 6fnr:A, 6fnr:B, 6fns:A, 6fns:B, 6fnt:A, 6fnt:B, 4pin:A, 4pin:B, 4pio:A, 4pio:B, 4pip:A, 4pip:B, 4pip:C, 4pip:D, 4uy5:A, 4uy6:A, 4uy7:B
13 6jmg:A 267 8 0.0920 0.0300 1.0000 5.9 6jmg:B
14 3ip4:B 482 16 0.1034 0.0187 0.5625 6.1 2df4:B, 2dqn:B, 2f2a:B, 2g5h:B, 2g5i:B
15 5zog:A 316 38 0.1724 0.0475 0.3947 6.4 1ul1:X, 5zoe:A, 5zof:A
16 4u94:A 451 16 0.1149 0.0222 0.6250 6.8 4u98:A, 4wzy:A
17 6eu0:V 273 23 0.1149 0.0366 0.4348 7.2 7q5b:X
18 6gs8:A 301 11 0.1034 0.0299 0.8182 7.2 7b0e:A, 6gs8:B, 6gs8:C, 6gs8:D, 6gs8:E, 6gs8:F, 6gtm:A, 6gtm:B, 6gtm:C, 6gtm:D
19 1zlp:B 285 51 0.1494 0.0456 0.2549 7.7 1zlp:A
20 4g8b:A 277 20 0.1264 0.0397 0.5500 9.2 4g8b:B, 4g8c:A, 4g8c:B, 4g9e:A, 4g9e:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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