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BioLiP
>protein
MPNILYKIDNQYPYFTKNEKKIAQFILNYPHKVVNMTSQEIANQLETSSTSIIRLSKKVTPGGFNELKTRLSKFLPKEVT
QYNNKLHSR

The query sequence (length=89) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3iwf:A 89 89 1.0000 1.0000 1.0000 1.09e-61
2 8k3b:A 281 73 0.2472 0.0783 0.3014 2.27e-06 8ju9:A
3 4ivn:A 264 70 0.1910 0.0644 0.2429 5.86e-04 4ivn:B
4 6i7s:B 462 36 0.1573 0.0303 0.3889 0.26 6i7s:A
5 5w7p:A 396 39 0.1685 0.0379 0.3846 1.6 5w7r:A, 5w7s:A
6 8uhe:K 593 34 0.1236 0.0185 0.3235 2.0
7 5oet:B 420 51 0.1685 0.0357 0.2941 2.6
8 8com:D 93 51 0.1461 0.1398 0.2549 2.6 8com:H
9 3p47:A 270 87 0.2472 0.0815 0.2529 4.1 3q1x:A
10 1af7:A 274 41 0.1573 0.0511 0.3415 4.4 1bc5:A
11 3op4:A 247 30 0.1461 0.0526 0.4333 5.9 4i08:A, 4i08:B, 3op4:B, 3rsh:A, 3rsh:B, 4wk6:A, 4wk6:B, 4wk6:C, 4wk6:D
12 3tzc:A 224 27 0.1461 0.0580 0.4815 6.3
13 2anl:A 327 49 0.2022 0.0550 0.3673 9.5 2anl:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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