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BioLiP
>protein
MPLAELGARLYREKACFSCHSIDGSRLVGPSFKGLYGSTRTFEDGTTAVADENYLRESILQPGAKVVQGYPNVMPASYAS
LSEREVAALIEFIKQQQ

The query sequence (length=97) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1w2l:A 97 97 1.0000 1.0000 1.0000 2.37e-69
2 1cor:A 82 91 0.3196 0.3780 0.3407 7.80e-06 6kq1:A, 6kq1:B
3 7zs0:A 278 99 0.3196 0.1115 0.3131 7.47e-05 7zs1:A, 7zs2:A
4 7zs0:A 278 75 0.2371 0.0827 0.3067 0.001 7zs1:A, 7zs2:A
5 1cch:A 82 87 0.2680 0.3171 0.2989 1.82e-04 1fi3:A, 2i8f:A
6 2d0s:A 79 84 0.2474 0.3038 0.2857 3.08e-04
7 351c:A 82 26 0.1134 0.1341 0.4231 0.001 451c:A, 1dvv:A, 2exv:A, 2exv:C, 2pac:A, 3x39:A, 3x39:B
8 3x15:A 87 93 0.2680 0.2989 0.2796 0.007 3x15:G, 3x15:D, 3x15:J, 2zxy:A
9 5xec:A 82 84 0.2371 0.2805 0.2738 0.008 5xed:A
10 3m97:X 118 30 0.1340 0.1102 0.4333 0.011 1c7m:A, 1i6d:A, 1i6e:A, 1ql3:A, 1ql3:B, 1ql3:C, 1ql3:D, 1ql4:A, 1ql4:B, 1ql4:C, 1ql4:D
11 7vzg:c 145 99 0.2680 0.1793 0.2626 0.047 7vzr:c
12 5xec:C 80 25 0.0928 0.1125 0.3600 0.068 5xed:C
13 4xxl:A 92 26 0.1237 0.1304 0.4615 0.071
14 5aur:A 83 87 0.2268 0.2651 0.2529 0.090 2ai5:A, 5aur:C, 5aur:E, 5aur:G, 5aus:A, 5aus:C, 1ayg:A, 3vym:A, 1ynr:A, 1ynr:B, 1ynr:C, 1ynr:D, 4zid:A
15 7b21:AAA 92 23 0.1031 0.1087 0.4348 0.12
16 7w2j:C 418 92 0.2680 0.0622 0.2826 0.12 8jej:C, 8jek:C, 8k6j:C, 8k6k:C, 7w2j:F, 7wsq:C, 7wsq:F, 8xcm:C, 8xcn:C
17 8gth:E 105 24 0.1031 0.0952 0.4167 0.13 8gth:A, 8gth:B, 8gth:C, 8gth:F, 8gth:D
18 1c53:A 79 48 0.1856 0.2278 0.3750 0.14
19 8hdd:B 121 89 0.2474 0.1983 0.2697 0.16
20 8smr:K 181 81 0.2371 0.1271 0.2840 0.28 6q2u:A, 8smr:N, 8snh:K, 8snh:N
21 1dvh:A 79 48 0.1649 0.2025 0.3333 0.34 2dvh:A, 1dwl:B, 1e08:E
22 6f77:A 399 65 0.1959 0.0476 0.2923 0.37 6f77:C, 6f77:D, 6f77:E, 6f77:F
23 2q5d:B 845 53 0.1959 0.0225 0.3585 0.50
24 5f1q:A 513 67 0.1753 0.0331 0.2537 0.78 5f1q:B
25 7aih:An 314 45 0.1649 0.0510 0.3556 0.80 7ane:An
26 1cyj:A 90 91 0.2680 0.2889 0.2857 1.3 1cyi:A
27 7u2v:A 114 41 0.1340 0.1140 0.3171 1.7 7u2v:B
28 8uf3:A 187 32 0.1340 0.0695 0.4062 2.4 8uf3:B
29 1c52:A 131 93 0.2887 0.2137 0.3011 3.4 1dt1:A, 1foc:A, 1foc:B, 2fwl:A, 1qyz:A, 1r0q:A, 3vnw:A
30 6rm8:A 655 41 0.1340 0.0198 0.3171 3.9 6fa5:A, 6faa:A, 6fac:A, 6rm9:A, 6rma:A, 6rmb:A, 6rmc:A, 6rmc:B, 6zm2:A
31 8p5d:LV0 141 47 0.1546 0.1064 0.3191 4.4 8p60:LV0, 8p60:KV0, 7qca:LV0
32 7ehp:A 397 67 0.2577 0.0630 0.3731 4.9 7ehp:B
33 2vav:B 350 44 0.1237 0.0343 0.2727 6.0 2vat:A, 2vat:B, 2vat:C, 2vat:D, 2vat:E, 2vat:F, 2vat:G, 2vat:H, 2vat:I, 2vat:J, 2vat:K, 2vat:L, 2vav:A, 2vav:C, 2vav:D, 2vav:E, 2vav:F, 2vav:G, 2vav:H, 2vav:I, 2vav:J, 2vav:K, 2vav:L, 2vax:A, 2vax:B, 2vax:C, 2vax:D, 2vax:E, 2vax:F, 2vax:G, 2vax:H, 2vax:I, 2vax:J, 2vax:K, 2vax:L
34 3o5c:A 308 31 0.1134 0.0357 0.3548 6.3 3o5c:B, 3o5c:C, 3o5c:D
35 1hv5:E 165 40 0.1031 0.0606 0.2500 8.0 1hv5:A, 1hv5:B, 1hv5:C, 1hv5:D, 1hv5:F
36 1dpp:A 507 67 0.1753 0.0335 0.2537 10.0 1dpp:C, 1dpp:E, 1dpp:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218