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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MNWKEFEVFCVTYLNKTYGNKFAKKGESDSTTSDILFTGNNPFYIEAKMPHSQCGQFVLIPNRAEYKFDYSPKNKSEINP
YTQKIMQFMSENFSEYANLSTKGKIIPLPESVFVNWIKEYYKSKSVKFFITSNGDFIIFPIEHFEHYFNVSCTYRIKKSG
SRHLNSKSLPDFKQALDKKGISYTMRGLELHSDENIHDKRISGDDKDFLIKENNGAYHVKILSNTFNANVIFSISLKNNI
SLFILNEDRKAFEAAISL

The query sequence (length=258) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6uke:X 258 258 1.0000 1.0000 1.0000 0.0 6ukf:X, 6ukg:X, 6ukh:X, 6uki:X, 6uki:Y
2 6qp1:B 398 102 0.1085 0.0704 0.2745 0.024 6qp1:A, 6qp2:A, 6qp2:B
3 6jmt:D 350 62 0.0775 0.0571 0.3226 0.56 6jmt:C, 6jmt:E, 6jmt:F, 6jmt:A, 6jmt:B
4 8fjm:A 251 73 0.0930 0.0956 0.3288 2.6 8fjm:B, 8fjn:A
5 7cr7:A 354 55 0.0659 0.0480 0.3091 5.8 7cr1:A, 7cr1:B, 7cr1:C, 7cr1:D, 7cr2:B, 7cr2:C, 7cr2:D, 7cr2:A, 7cr4:A, 7cr4:B, 7cr4:D, 7cr4:F, 7cr7:G, 7cr7:B, 7cr7:D, 8ijk:A, 8ijk:C, 8ijk:B, 8ijk:D, 8izy:A, 8izy:B, 8izy:D, 8izy:C, 8j01:G, 8j01:A, 8j01:B, 8j01:D, 8j02:G, 8j02:A, 8j02:B, 8j02:D, 8j03:A, 8j03:D, 8j03:G, 8j03:I, 8j04:A, 8j04:G, 8j04:B, 8j04:D, 8w4u:A, 8w4u:B, 8w4u:D, 8w4u:G
6 7f3t:A 330 33 0.0310 0.0242 0.2424 5.9 7f3t:B, 7f6v:A, 7f6v:B, 7n0l:A, 7n0l:B, 7n7p:A, 7n7p:B
7 8x43:A 327 55 0.0659 0.0520 0.3091 6.1 8j00:A, 8j00:B, 8j00:C, 8j00:D, 8x43:G, 8x43:C, 8x43:E
8 2xpi:A 520 47 0.0620 0.0308 0.3404 8.3 2xpi:D
9 7bl5:8 157 65 0.0736 0.1210 0.2923 8.4
10 6hrk:A 135 47 0.0543 0.1037 0.2979 8.6 6hrk:B, 6hrk:C, 6hrk:D
11 4bxs:V 1262 18 0.0349 0.0071 0.5000 8.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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