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BioLiP
>protein
MNTLQLINKNHPLKKNQEPPHLVLAPFSDHDVYLQPEVAKQWERLVRATGLEKDIRLVSGYRTEKEQRRLWEYSLKENGL
AYTKQFVALPGCSEHQIGLAIDVGLKKQEDDDLICPHFRDSAAADLFMQQMMNYGFILRYPEDKQEITGISYEPWHFRYV
GLPHSQVITAQKWTLEEYHDYLAQTVRQFA

The query sequence (length=190) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4oak:A 190 190 1.0000 1.0000 1.0000 7.81e-145 4mur:A, 4mur:B, 4mus:A, 4mus:B, 4mut:A, 4mut:B, 4oak:B
2 4f78:A 251 180 0.4158 0.3147 0.4389 4.88e-45 4muq:A
3 4ox3:A 214 186 0.3474 0.3084 0.3548 5.00e-29
4 4mph:B 184 182 0.3368 0.3478 0.3516 1.05e-25 4mph:A
5 6a6a:A 183 185 0.3158 0.3279 0.3243 9.78e-22 6a6a:B, 5hnm:A, 5hnm:B, 5hnm:C, 5hnm:D, 5hnm:E, 5hnm:F, 5zhf:A, 5zhf:B, 5zhw:A, 5zhw:B
6 4oxd:A 185 179 0.2789 0.2865 0.2961 3.01e-17 4d0y:A, 4d0y:B, 4nt9:B, 4nt9:A, 4nt9:C, 4ox5:A, 4oxd:C, 4oxd:B, 4oxd:E, 4oxd:D
7 6akv:A 151 60 0.1000 0.1258 0.3167 0.32
8 3pmq:A 593 73 0.1053 0.0337 0.2740 0.67
9 1kqf:A 982 38 0.0842 0.0163 0.4211 1.0 1kqg:A
10 2vo9:A 149 58 0.0947 0.1208 0.3103 1.1 2vo9:B, 2vo9:C
11 1rqx:C 338 59 0.1053 0.0592 0.3390 2.3 1rqx:A, 1rqx:B, 1rqx:D, 1tyz:A, 1tyz:B, 1tyz:C, 1tyz:D, 1tz2:A, 1tz2:B, 1tz2:C, 1tz2:D, 1tzj:A, 1tzj:B, 1tzj:C, 1tzj:D, 1tzk:A, 1tzk:B, 1tzk:C, 1tzk:D, 1tzm:A, 1tzm:B, 1tzm:C, 1tzm:D
12 7aih:V 141 35 0.0684 0.0922 0.3714 4.1 7am2:V, 7ane:V
13 7pkt:w 120 44 0.0842 0.1333 0.3636 4.9
14 9f1b:DB 837 51 0.0842 0.0191 0.3137 5.6 9f1c:DB, 9f1d:DB, 9fpz:B, 9fq0:B
15 6c95:A 773 51 0.0842 0.0207 0.3137 5.7 6c9m:A, 6c9m:C, 6ppl:B, 6pw9:B
16 7aoh:B 1134 33 0.0632 0.0106 0.3636 7.7 7amv:B, 7aof:B, 7aoz:B, 7ap8:B, 7ap9:B, 8c8h:B, 6rfl:B, 6ric:B, 6rid:B, 6rie:B
17 8s9x:A 770 34 0.0684 0.0169 0.3824 7.9 8s9t:A, 8s9u:A, 8s9v:A
18 1yfr:A 448 49 0.0737 0.0312 0.2857 8.9 1yfr:B, 1yfs:A, 1yfs:B, 1ygb:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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