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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MNPIILIIILMTVMLGTIIVMISTHWLLIWIGFEMNMLAIIPIMMKKHNPRATEASTKYFLTQSTASMLLMMAIIINLMF
SGQWTVMKLFNPMASMLMTMALAMKLGMAPFHFWVPEVTQGIPLSSGLILLTWQKLAPMSVLYQILPSINLDLILTLSIL
SITIGGWGGLNQTQLRKIMAYSSIAHMGWMTAVLLYNPTMTLLNLIIYIIMTSTMFTLFMANSTTTTLSLSHTWNKAPIM
TILVLITLLSMGGLPPLSGFMPKWMIIQEMTKNDSIILPTLMAITALLNLYFYMRLTYSTALTMFPSTNNMKMKWQFPTT
KRMTLLPTMTVLSTMLLPLTPILSILE

The query sequence (length=347) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7qso:N 347 347 0.9193 0.9193 0.9193 0.0 7r41:N, 7r42:N, 7r44:N, 7r45:N, 7r47:N, 7r48:N, 7r4c:N, 7r4d:N, 7r4f:N, 7r4g:N, 6zkm:N, 6zkn:N, 6zku:N, 6zkv:N
2 5gup:i 347 347 0.7666 0.7666 0.7666 0.0 7v2c:i, 7v2d:i, 7v2e:i, 7v2f:i, 7v2h:i, 7v2k:i, 7v2r:i, 7v30:i, 7v31:i, 7v32:i, 7v33:i, 7v3m:i, 7vbl:i, 7vbp:i, 7vc0:i, 7vwl:i, 7vxs:i, 7vy1:i, 7vy9:i, 7vye:i, 7vyg:i, 7vyi:i, 7vys:i, 7vz8:i, 7vzv:i, 7vzw:i, 7w00:i, 7w0h:i, 7w0r:i, 7w0y:i, 7w1o:i, 7w1p:i, 7w1t:i, 7w1u:i, 7w1v:i, 7w1z:i, 7w20:i, 7w2k:i, 7w2r:i, 7w2u:i, 7w2y:i, 7w31:i, 7w32:i, 7w35:i, 7w4c:i, 7w4d:i, 7w4e:i, 7w4f:i, 7w4g:i, 7w4j:i, 7w4k:i, 7w4l:i, 7w4m:i, 7w4n:i, 7w4q:i
3 5xtc:i 347 321 0.6052 0.6052 0.6542 2.53e-134 5xtd:i, 5xth:i, 5xti:i, 5xti:Bi
4 8iaq:N 344 343 0.5706 0.5756 0.5773 3.95e-124 8ib6:N, 8ibb:N, 8ibf:N, 8ic4:N
5 8qby:N 479 323 0.2334 0.1691 0.2508 3.33e-24
6 7aqq:N 488 385 0.2536 0.1803 0.2286 2.77e-17 7a23:I, 7a24:I, 7ar7:N, 7ar8:N, 8bef:N, 8bpx:N
7 6l7o:B 493 314 0.2334 0.1643 0.2580 8.41e-15 6l7p:B
8 7zmb:2 558 240 0.1643 0.1022 0.2375 1.89e-11 7zme:2, 7zmg:2, 7zmh:2
9 7o6y:2 469 311 0.2190 0.1620 0.2444 3.56e-11 7o71:2, 6rfq:2, 6rfr:2, 6y79:2, 7zkp:2
10 7zkq:2 448 303 0.2046 0.1585 0.2343 1.27e-10
11 3rko:M 504 293 0.1988 0.1369 0.2355 7.83e-08 3rko:C
12 6tjv:F 600 240 0.1816 0.1050 0.2625 2.49e-07
13 8bpx:M 494 183 0.1470 0.1032 0.2787 9.54e-07 7a23:M, 7aqq:M, 7ar7:M, 7ar8:M, 7arb:M, 8bef:M
14 8e9i:M 518 218 0.1499 0.1004 0.2385 1.33e-06 8e9g:M, 8e9h:M
15 8qby:M 503 333 0.2075 0.1431 0.2162 5.96e-06 8qc1:M
16 6l7o:D 504 308 0.1873 0.1290 0.2110 1.42e-05 6l7p:D
17 5xtc:r 459 235 0.1787 0.1351 0.2638 1.63e-04 5xtd:r, 5xth:r, 5xti:r, 5xti:Br
18 5lnk:L 599 219 0.1499 0.0868 0.2374 3.64e-04
19 7v2h:l 606 211 0.1268 0.0726 0.2085 0.001 7vc0:l, 7vy1:l, 7vys:l, 7w0h:l, 7w2l:l, 7w2r:l, 7w2y:l, 7w32:l, 7w4q:l
20 6rfq:4 486 203 0.1499 0.1070 0.2562 0.002 6rfr:4, 6y79:4
21 7a23:a 600 176 0.1182 0.0683 0.2330 0.004
22 3rko:L 612 319 0.1960 0.1111 0.2132 0.004 3rko:B
23 8bpx:L 665 108 0.0807 0.0421 0.2593 0.006 8bef:L
24 6l7o:F 647 253 0.1412 0.0757 0.1937 0.017 6l7p:F
25 8e9g:L 625 277 0.1499 0.0832 0.1877 0.12 8e9h:L, 8e9i:L
26 8iaq:M 459 97 0.0836 0.0632 0.2990 0.12 8ib6:M, 8ibb:M, 8ibf:M, 8ic4:M
27 8gym:n5 709 224 0.1499 0.0733 0.2321 0.33 8gym:N5, 7tgh:5
28 8qby:L 659 122 0.0807 0.0425 0.2295 0.42 8qc1:L
29 7v2c:r 459 201 0.1383 0.1046 0.2388 0.47 7v2d:r, 7v2e:r, 7v2f:r, 7v2h:r, 7v2k:r, 7v2r:r, 7v30:r, 7v31:r, 7v32:r, 7v33:r, 7v3m:r, 7vbl:r, 7vbp:r, 7vc0:r, 7vwl:r, 7vxs:r, 7vy1:r, 7vy9:r, 7vye:r, 7vyg:r, 7vyi:r, 7vys:r, 7vz8:r, 7vzv:r, 7vzw:r, 7w00:r, 7w0h:r, 7w0r:r, 7w0y:r, 7w1o:r, 7w1p:r, 7w1t:r, 7w1u:r, 7w1v:r, 7w1z:r, 7w20:r, 7w2k:r, 7w2l:r, 7w2r:r, 7w2u:r, 7w2y:r, 7w31:r, 7w32:r, 7w35:r, 7w4c:r, 7w4d:r, 7w4e:r, 7w4f:r, 7w4g:r, 7w4j:r, 7w4k:r, 7w4l:r, 7w4m:r, 7w4n:r, 7w4q:r
30 5lnk:M 459 317 0.2248 0.1699 0.2461 0.72 8q0a:M, 8q0f:M, 8q0m:M, 8q0o:M, 8q1y:M, 8q25:M, 8q45:M, 8q48:M, 8q49:M, 8q4a:M, 7qso:M, 7r4f:M, 7r4g:M, 6zkm:M, 6zkn:M, 6zku:M, 6zkv:M
31 6vg5:A 81 71 0.0461 0.1975 0.2254 5.5 6vg5:B
32 6he0:A 477 89 0.0634 0.0461 0.2472 9.0 6hdw:A, 6hdx:A, 6hdy:A, 6he2:A, 6he2:B
33 8hpk:A 390 102 0.0836 0.0744 0.2843 9.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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