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BioLiP
>protein
MNNEVVLINNIISQINTHLSQAASDDIILRLLEDKVISEREAKMMVSVMDRSVLHIDLPERDELRARMMKAMLTSLKL

The query sequence (length=78) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6fh4:C 78 78 1.0000 1.0000 1.0000 9.18e-50 6fh4:A, 6fh4:B
2 3h0d:A 155 77 0.6538 0.3290 0.6623 1.72e-30 3h0d:B
3 7r8e:A 548 38 0.2051 0.0292 0.4211 0.33 7fdv:A, 7fdv:D, 7oz1:A, 7oz1:B, 7r8d:A, 7r8d:B, 7r8e:B
4 7mq8:LZ 183 53 0.2308 0.0984 0.3396 0.56 7mq9:LZ
5 7mqa:LZ 162 43 0.2051 0.0988 0.3721 0.95
6 7cfd:F 182 29 0.1410 0.0604 0.3793 4.6 7cfd:B, 7cfd:A, 7cfd:C, 7cfd:E, 7cfd:G, 7cfd:H, 7cfd:D
7 2wzf:A 515 21 0.1154 0.0175 0.4286 8.5
8 3u57:A 471 31 0.1282 0.0212 0.3226 8.9 4atl:A, 4atl:B, 4ek7:A, 4ek7:B, 3u57:B, 3u5y:A, 3u5y:B, 3zj6:A, 3zj6:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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