Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MNLVNKAQLQKMAYVKFRIQEDEYVAILNALEEYHNMSESSVVEKYLKLKDINNLTDNYLNTYKKSGRNKALKKFKEYLT
MEVLELKNNSLTPVEKNLHFIWIGGQINDTAINYINQWKDVNSDYTVKVFYDSNAFLINTLKKTIVESATNNTLESFREN
LNDPEFDYNKFYRKRMEIIYDKQKHFIDYYKSQIEENPEFIIDNIIKTYLSNEYSKDLEALNKYIEESLNKITANNGNDI
RNLEKFADEDLVRLYNQELVERWNLAAASDILRISMLKEDGGVYLDVDMLPGIQPDLFKSINKPDSITNTSWEMIKLEAI
MKYKEYIPGYTSKNFDMLDEEVQRSFESALSSKSDKSEIFLPLDDIKVSPLEVKIAFANNSVINQALISLKDSYCSDLVI
NQIKNRYKILNDNLNPSINEGTDFNTTMKIFSDKLASISNEDNMMFMIKITNYLKVGFAPDVRSTINLSGPGVYTGAYQD
LLMFKDNSTNIHLLEPELRNFEFPKTKISQLTEQEITSLWARAKSQFEEYKKGYFEG

The query sequence (length=537) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8x2h:A 2363 541 1.0000 0.2273 0.9926 0.0 8jb5:A, 2vkd:A, 2vkd:B, 2vkd:C, 2vkh:A, 2vkh:B, 2vkh:C, 2vl8:A, 2vl8:B, 2vl8:C
2 8x2i:A 2303 541 1.0000 0.2332 0.9926 0.0
3 8y9b:B 1607 540 0.7523 0.2514 0.7481 0.0
4 8qeo:A 2146 540 0.7523 0.1883 0.7481 0.0
5 8qen:A 2363 540 0.7523 0.1710 0.7481 0.0 9bja:A, 9bja:B, 2bvl:A, 2bvm:A, 6c0b:A, 7lou:A, 7lou:B, 7lov:A, 7lov:B, 3pa8:A, 3pa8:B, 3pee:B, 3pee:A, 7s0y:A, 5uqm:A, 5uqn:A, 5uqt:A, 5uqt:B
6 8y9c:B 1609 542 0.7430 0.2480 0.7362 0.0
7 7ml7:A 1216 541 0.7486 0.3306 0.7431 0.0
8 6oq5:A 2346 541 0.7412 0.1697 0.7357 0.0 6oq7:A, 7s0z:B, 7s0z:A
9 8jhz:A 2615 536 0.5382 0.1105 0.5392 0.0
10 7pog:A 2382 539 0.5233 0.1180 0.5213 4.98e-173 4dmw:A, 3ho6:A, 3ho6:B, 4r04:A, 3srz:A, 3ss1:A, 7u2p:A, 7uby:B, 7uby:A, 5uqk:A, 5uql:A
11 6rtg:A 503 404 0.1974 0.2107 0.2624 7.62e-19
12 4mix:B 277 217 0.1043 0.2022 0.2581 0.001 4mix:A
13 8ovs:AAA 276 71 0.0503 0.0978 0.3803 0.002 8ovs:BBB
14 8ovs:AAA 276 152 0.0689 0.1341 0.2434 0.049 8ovs:BBB
15 8a8o:A 556 282 0.1155 0.1115 0.2199 0.11 8a8o:B
16 4ihb:E 126 55 0.0335 0.1429 0.3273 0.27 7jof:A, 7jof:B, 7jof:C, 7jof:D
17 7f0b:A 282 81 0.0372 0.0709 0.2469 0.81 7f0c:A, 7f0f:A
18 8dvv:A 3886 59 0.0317 0.0044 0.2881 1.1 8dvv:B, 8dvv:C, 8dvv:D
19 8jif:R 256 82 0.0484 0.1016 0.3171 1.4 2znc:A, 3znc:A
20 7cf9:A 3949 46 0.0298 0.0041 0.3478 2.0 7cf9:C, 7cf9:E, 7cf9:G, 8dtb:G, 8dtb:D, 6m2w:A, 6m2w:D, 6m2w:G, 6m2w:J
21 6wot:A 4197 46 0.0298 0.0038 0.3478 2.0 6wot:B, 6wot:C, 6wot:D
22 7m6a:A 4306 46 0.0298 0.0037 0.3478 2.0 7m6a:G, 7m6a:B, 7m6a:I, 7m6l:A, 7m6l:G, 7m6l:B, 7m6l:I
23 8vk4:D 4379 46 0.0298 0.0037 0.3478 2.0 8vjj:A, 8vjj:D, 8vjj:B, 8vjj:C, 8vjk:A, 8vjk:B, 8vjk:C, 8vjk:D, 8vk3:A, 8vk3:D, 8vk3:B, 8vk3:C, 8vk4:A, 8vk4:B, 8vk4:C
24 7tzc:A 4404 46 0.0298 0.0036 0.3478 2.0 3rqr:A, 8sen:A, 8sen:B, 8sen:C, 8sen:D, 8seo:A, 8seo:B, 8seo:C, 8seo:D, 8sep:A, 8sep:B, 8sep:C, 8sep:D, 8seq:A, 8seq:B, 8seq:C, 8seq:D, 8ser:A, 8ser:B, 8ser:C, 8ser:D, 8ses:A, 8ses:B, 8ses:C, 8ses:D, 8set:A, 8set:B, 8set:C, 8set:D, 7tzc:B, 7tzc:G, 7tzc:I
25 7t65:A 4252 46 0.0298 0.0038 0.3478 2.1 7t64:A, 7t64:B, 7t64:C, 7t64:D, 7t65:B, 7t65:C, 7t65:D
26 8duj:J 3892 46 0.0298 0.0041 0.3478 2.1
27 8duj:A 3823 46 0.0298 0.0042 0.3478 2.1
28 8duj:G 3933 46 0.0298 0.0041 0.3478 2.1
29 8dve:G 3944 46 0.0298 0.0041 0.3478 2.1 8dtb:A, 8dve:D, 8dve:A, 8dve:J
30 8duj:D 3865 46 0.0298 0.0041 0.3478 2.2
31 6u7a:D 429 65 0.0410 0.0513 0.3385 2.7 5c6u:A, 6u78:A, 6u78:B, 6u78:C, 6u78:D, 6u7a:A, 6u7a:B, 6u7a:C, 6u7a:E, 6u7a:F, 6u7a:G, 6u7a:H
32 8dty:A 4004 57 0.0298 0.0040 0.2807 3.5 8dty:B, 8dty:C, 8dty:D
33 1q5e:A 404 31 0.0205 0.0272 0.3548 4.1 1pkf:A, 1q5d:A
34 5wan:A 341 123 0.0577 0.0909 0.2520 6.7 6sgg:AAA, 6sgl:AAA, 6sgm:AAA, 6sgn:AAA, 6tee:AAA, 6tef:AAA, 6teg:AAA
35 7nfc:A 3562 81 0.0521 0.0079 0.3457 7.1 8bh3:S, 8bh3:A, 8bhv:A, 8bhv:F, 8bhy:A, 8bhy:S, 8bot:F, 8bot:S, 7nfc:F
36 8dtz:A 4061 46 0.0261 0.0034 0.3043 7.3 8dtz:B, 8dtz:C, 8dtz:D
37 7ua3:A 4443 57 0.0298 0.0036 0.2807 7.8 7ua3:B, 7ua3:C, 7ua3:D, 7ua4:A, 7ua4:B, 7ua4:C, 7ua4:D

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218