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BioLiP
>protein
MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHNVPAFVSGKALKDAV

The query sequence (length=69) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4yew:C 71 70 1.0000 0.9718 0.9857 1.71e-42 6o6k:B, 6oaj:D, 4yex:C, 4yft:C
2 6oaj:B 79 78 0.9855 0.8608 0.8718 8.51e-41 6o6k:A, 6o8q:A, 6o8q:I, 6oaj:C, 4yey:C, 4yf0:A, 4yfh:A
3 6o8q:B 91 89 1.0000 0.7582 0.7753 1.36e-39 6o8q:G, 6o8q:H, 6o8q:F, 4yf0:B, 4yfh:B
4 4qju:A 90 89 0.5362 0.4111 0.4157 1.21e-16 4qju:B
5 1p71:A 94 89 0.5072 0.3723 0.3933 4.35e-13 1p51:A, 1p51:B, 1p51:D, 1p51:C, 1p71:B, 1p78:A, 1p78:B
6 4dky:B 101 51 0.3043 0.2079 0.4118 6.16e-09
7 8flj:F 94 90 0.3333 0.2447 0.2556 5.52e-07 8flj:H
8 2iie:A 204 50 0.2464 0.0833 0.3400 0.004 2ht0:A, 1ihf:A, 2iif:A, 5j0n:I, 5j0n:K, 1ouz:A, 1owf:A, 1owg:A, 5wfe:K
9 8flj:G 98 50 0.2174 0.1531 0.3000 0.018 8flj:E
10 2np2:A 102 93 0.2899 0.1961 0.2151 1.4 2np2:B
11 3vm7:A 470 15 0.1159 0.0170 0.5333 8.9
12 7mqa:NS 914 71 0.2754 0.0208 0.2676 9.1 6o16:A, 6o16:B
13 6nvo:A 200 36 0.1739 0.0600 0.3333 9.4 6nvp:A
14 8cpl:C 499 18 0.1449 0.0200 0.5556 9.5 8cpl:A, 8cpl:B, 8cpl:D, 1lp1:B, 4uox:A, 4uox:B, 4uox:C, 4uox:D, 4uoy:A, 4uoy:B, 4uoy:C, 4uoy:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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