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BioLiP
>protein
MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHANVPAFVSGKALKDAVK

The query sequence (length=71) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4yew:C 71 71 0.9859 0.9859 0.9859 7.67e-45 6o6k:B, 6oaj:D, 4yex:C, 4yft:C
2 6oaj:B 79 79 0.9859 0.8861 0.8861 4.14e-42 6o6k:A, 6o8q:A, 6o8q:I, 6oaj:C, 4yey:C, 4yf0:A, 4yfh:A
3 6o8q:B 91 90 1.0000 0.7802 0.7889 6.36e-41 6o8q:G, 6o8q:H, 6o8q:F, 4yf0:B, 4yfh:B
4 4qju:A 90 90 0.5352 0.4222 0.4222 2.02e-17 4qju:B
5 1p71:A 94 89 0.4930 0.3723 0.3933 3.78e-13 1p51:A, 1p51:B, 1p51:D, 1p51:C, 1p71:B, 1p78:A, 1p78:B
6 4dky:B 101 89 0.4225 0.2970 0.3371 1.03e-09
7 8flj:F 94 90 0.3239 0.2447 0.2556 1.25e-06 8flj:H
8 2iie:A 204 56 0.2535 0.0882 0.3214 0.001 2ht0:A, 1ihf:A, 2iif:A, 5j0n:I, 5j0n:K, 1ouz:A, 1owf:A, 1owg:A, 5wfe:K
9 8flj:G 98 50 0.2113 0.1531 0.3000 0.017 8flj:E
10 3zxu:A 211 48 0.1690 0.0569 0.2500 3.2 5mu3:A, 5mu3:D, 3zxu:C
11 2p18:A 283 39 0.1690 0.0424 0.3077 8.0 2p1e:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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