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BioLiP
>protein
MNKAKIFMNGQSQAVRLPKEFRFSVKEVSVIPLGKGIVLQPLPNSWKDVFQEMAEISSDDIFPEGRKDLPPQKRKYFE

The query sequence (length=78) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3zvk:F 78 78 1.0000 1.0000 1.0000 6.39e-53 3zvk:E, 3zvk:G, 3zvk:H
2 6ifm:F 68 50 0.2308 0.2647 0.3600 4.92e-06 6ifm:H, 6ifm:B, 6ifm:D
3 5l6l:D 84 71 0.2821 0.2619 0.3099 3.81e-05 5l6l:A, 5l6l:E, 5l6l:H
4 7rzy:1 311 21 0.1282 0.0322 0.4762 1.1 7rzy:2, 7rzy:7, 7rzy:3, 7rzy:4, 7rzy:5, 7rzy:6, 7ufi:1, 7ufi:7, 7ufi:2, 7ufi:3, 7ufi:4, 7ufi:5, 7ufi:6, 7ufm:D, 7ufm:I, 7ufm:A, 7ufm:B, 7ufm:C, 7ufm:E, 7ufm:F, 7ufm:G, 7ufm:H, 7ufm:J, 7ufm:K, 7ufm:L, 7ufm:M, 7ufm:N
5 5lnk:M 459 16 0.1026 0.0174 0.5000 1.5 8q0a:M, 8q0f:M, 8q0m:M, 8q0o:M, 8q1y:M, 8q25:M, 8q45:M, 8q48:M, 8q49:M, 8q4a:M, 7qso:M, 7r4f:M, 7r4g:M, 6zkm:M, 6zkn:M, 6zku:M, 6zkv:M
6 2gk1:I 440 45 0.1923 0.0341 0.3333 2.9 2gk1:J, 2gk1:K, 2gk1:L
7 2d40:A 289 59 0.1923 0.0519 0.2542 6.3 2d40:B, 2d40:C, 2d40:D
8 6q8o:H 353 47 0.1923 0.0425 0.3191 6.6 6q8o:Q

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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