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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MNIYRYEENPLITPLDVKPIHEGFEVIGAFNGGVAEYNGEVLLLLRVAEKPVSEDPEIVLAPVYNAKNKELELQSFRLDD
ENYDFEDPRMIRSKAKLEGFSYLTSLSYIRIARSKDGHHFTLDEKPFLYPFNEYQTFGIEDARVTQIGDTYHVNFSAVSE
FGVADALVTTKDFENLEYQGNIFAPENKDVLIFPEKINGKYYALHRPSLKSIGNLDIWIASSPDLRSFGDHRHLLGIRPG
EYDSGRVGGGCVPIKTEEGWLILYHGATEENRYVMGAALLDLNDPTIVLKRTKTPILEPVADYEKNGFFGDVVFACGAIQ
EGDTLHMYYGVADTSMAGCDMKISEILHQLEVE

The query sequence (length=353) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5b0s:B 355 353 1.0000 0.9944 1.0000 0.0 5b0q:A, 5b0q:B, 5b0r:A, 5b0r:B, 5b0s:A
2 7fir:C 304 246 0.2635 0.3059 0.3780 3.02e-49 7fip:A, 7fip:B, 7fip:C, 7fip:D, 7fiq:C, 7fiq:B, 7fiq:A, 7fiq:D, 7fir:A, 7fir:B, 7fir:D, 7fis:C, 7fis:B, 7fis:A, 7fis:D
3 7fir:C 304 48 0.0340 0.0395 0.2500 3.6 7fip:A, 7fip:B, 7fip:C, 7fip:D, 7fiq:C, 7fiq:B, 7fiq:A, 7fiq:D, 7fir:A, 7fir:B, 7fir:D, 7fis:C, 7fis:B, 7fis:A, 7fis:D
4 5aye:A 335 237 0.2238 0.2358 0.3333 5.54e-34 5aye:B, 5aye:C, 5aye:D, 5aye:E, 5aye:F
5 4udg:B 321 252 0.2323 0.2555 0.3254 9.35e-33 4udg:A, 4udg:C, 4udg:D, 4udg:E, 4udg:F, 4udi:A, 4udi:B, 4udi:C, 4udi:D, 4udi:E, 4udi:F, 4udj:A, 4udj:B, 4udj:C, 4udj:D, 4udj:E, 4udj:F, 4udk:A, 4udk:B, 4udk:C, 4udk:D, 4udk:E, 4udk:F
6 3taw:A 349 269 0.2153 0.2178 0.2825 6.96e-19
7 5a7v:A 368 332 0.2436 0.2337 0.2590 7.27e-18 5a7v:B
8 5ayc:A 386 264 0.2068 0.1891 0.2765 1.80e-13
9 3was:A 389 253 0.1813 0.1645 0.2530 4.15e-10 4kmi:A, 4kmi:B, 3was:B, 3wat:A, 3wat:B, 3wau:A, 3wau:B
10 6q55:A 461 110 0.1020 0.0781 0.3273 0.12 6q5a:A
11 5dn8:A 405 50 0.0538 0.0469 0.3800 0.64
12 1axk:B 394 55 0.0482 0.0431 0.3091 1.0 1axk:A
13 7xn9:A 476 54 0.0482 0.0357 0.3148 2.3 2b46:X, 1bcx:A, 1bvv:A, 1c5i:A, 8qxy:B, 8qxy:A, 8qy0:B, 8qy0:A, 8qy1:A, 8qy1:B, 8qy2:A, 8qy3:A, 2qz3:A, 2qz3:B, 5tzo:A, 5tzo:B, 5tzo:C, 3vzm:A, 3vzn:A, 3vzn:B, 3vzo:A, 7xna:A
14 2mjd:A 115 32 0.0340 0.1043 0.3750 2.4 2mje:A
15 7lt9:B 131 42 0.0397 0.1069 0.3333 3.6 7d2s:B, 7d2t:B, 7d2t:D, 7d2u:B, 1nyp:A, 1u5s:B
16 2hx1:A 284 49 0.0397 0.0493 0.2857 7.9 2hx1:B, 2hx1:C, 2hx1:D
17 1l3l:B 233 49 0.0453 0.0687 0.3265 8.8 1h0m:A, 1h0m:B, 1h0m:C, 1h0m:D, 1l3l:D, 1l3l:A, 1l3l:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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