Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MNDYKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEV

The query sequence (length=57) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2kn9:A 81 57 1.0000 0.7037 1.0000 3.18e-39 7a9a:A, 7a9a:B, 7a9a:C, 7a9a:D, 7a9a:E, 7a9a:F, 7a9a:G, 7a9a:H
2 2v3b:B 53 52 0.6140 0.6604 0.6731 4.53e-22
3 1s24:A 56 53 0.5263 0.5357 0.5660 1.36e-15
4 1yk5:A 53 49 0.4912 0.5283 0.5714 2.59e-15 2pya:A, 1yk4:A, 1yk5:B, 1yk5:C, 1yk5:D
5 2dsx:A 52 48 0.4561 0.5000 0.5417 4.38e-15 1rdg:A
6 2kkd:A 52 49 0.4737 0.5192 0.5510 4.94e-15 2ql0:A, 1rb9:A, 1rdv:A, 2rdv:A, 2rdv:B, 2rdv:C, 7rxn:A, 8rxn:A
7 8f6t:A 428 47 0.4561 0.0607 0.5532 3.15e-14
8 5ai2:A 54 48 0.4561 0.4815 0.5417 6.25e-14 5ai3:A, 4ar3:A, 4ar4:A, 4ar5:A, 4ar6:A, 9bkl:A, 9bkp:A, 9bkt:A, 1bq8:A, 1bq9:A, 1brf:A, 1caa:A, 1cad:A, 1iu5:A, 1iu6:A, 4k9f:A, 3kyu:A, 3kyv:A, 3kyw:A, 3kyx:A, 3kyy:A, 5nw3:A, 5ome:A, 3ryg:A, 3rz6:A, 3rzt:A, 3ss2:A, 1vcx:A, 1zrp:A
9 6gps:A 330 52 0.4386 0.0758 0.4808 1.47e-13 6gpx:A
10 4xnw:C 350 52 0.4386 0.0714 0.4808 1.71e-13 4xnv:A, 4xnw:A
11 2pvx:B 54 52 0.4386 0.4630 0.4808 3.17e-13 2pvx:A, 2pvx:C, 2pvx:D, 2pvx:E, 2pvx:F, 2pvx:G, 2pvx:H
12 5xpd:A 269 51 0.4211 0.0892 0.4706 6.26e-13
13 2pve:A 52 51 0.4561 0.5000 0.5098 6.98e-13 2pve:B, 2pve:C
14 6li2:A 347 52 0.4386 0.0720 0.4808 7.30e-13
15 6me8:A 449 52 0.4386 0.0557 0.4808 7.38e-13 6me6:A, 6me7:A, 6me9:A
16 6iiv:A 461 52 0.4386 0.0542 0.4808 7.83e-13 1b13:A, 1b2j:A, 1b2o:A, 1b2o:B, 1be7:A, 1bfy:A, 1c09:A, 1c09:B, 1c09:C, 1fhh:A, 1fhm:A, 6iiu:A, 1irn:A, 1iro:A, 1r0h:A, 4rxn:A, 5rxn:A, 1smm:A, 1smu:A, 1smw:A, 1t9o:A, 1t9o:B, 1t9o:C, 1t9p:A, 1t9p:B, 1t9p:C, 1t9q:A
17 5vbl:B 353 52 0.4386 0.0708 0.4808 1.43e-12 6knm:B, 7sus:A
18 6ln2:A 437 52 0.4386 0.0572 0.4808 6.52e-12 3c59:A, 3c5t:A, 3iol:A, 5otu:A, 5otu:C, 5otv:C, 5otv:A, 5otw:C, 5otw:A, 5otx:A, 5otx:C, 4zgm:A
19 7f1t:A 423 52 0.4211 0.0567 0.4615 3.98e-11 6akx:A, 6akx:B, 6aky:A, 5d65:B, 5d65:A, 5d65:D, 4mbs:A, 4mbs:B, 5uiw:A
20 6bd4:A 379 55 0.4386 0.0660 0.4545 7.25e-11
21 7e0l:A 491 47 0.3509 0.0407 0.4255 6.83e-09 7e0l:B, 7e0l:K, 7e0l:M, 7wsx:A, 7wsx:B
22 8ito:B 74 56 0.3684 0.2838 0.3750 5.19e-08 8ito:A
23 2ms3:A 57 47 0.3333 0.3333 0.4043 8.87e-08
24 6rxn:A 45 49 0.3333 0.4222 0.3878 4.93e-05
25 1dx8:A 70 50 0.2807 0.2286 0.3200 9.07e-05 1h7v:A
26 2lcq:A 161 41 0.2105 0.0745 0.2927 0.24
27 2i13:B 144 47 0.2281 0.0903 0.2766 1.7
28 6knb:B 1120 42 0.2807 0.0143 0.3810 2.3 6knc:B
29 8ivz:A 165 38 0.1754 0.0606 0.2632 2.8 8ivz:B
30 2c7j:B 172 25 0.1754 0.0581 0.4000 8.0 2c7k:B, 2c7l:B
31 7r7j:B 574 28 0.1930 0.0192 0.3929 8.5 8h5y:B, 8h5y:A, 8h5z:B, 8h5z:A, 6jde:B, 6jde:A, 7r7j:A
32 7ocn:A 690 31 0.1930 0.0159 0.3548 9.5 7ocn:B, 7ocp:A, 7ocp:B, 7ocq:A, 7ocq:B, 7ocr:A, 7ocr:B, 7ocs:A, 7ocs:B, 7ocs:C, 7ocs:D, 7oct:A, 7oct:B, 7ocu:A, 7ocu:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218