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BioLiP
>protein
MNDIVASTQLPNTIKTITNDLRKLGLKKGMTVIVHSSLSSIGWISGGAVAVVEALMEVITEEGTIIMPTQSSDLSDPKHW
SRPPVPEEWWQIIRDNVPAFEPHITPTRAMGKVVECFRTYPNVVRSNHPLGSFAAWGRHAEEITVNQSLSMSLGEESPLR
KIYDLDGYILLIGVGYDSNTSVHLSEVRSGACELIKVGAPIIENGERVWKEFVDMDYDSDKFVEIGVEFEQKGTVTMGKI
GNAKCRLMKQRDIVDFGTEWFRKK

The query sequence (length=264) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3kzl:A 266 263 0.9924 0.9850 0.9962 0.0 3ijw:A, 3ijw:B, 3kzl:D, 3kzl:C, 3kzl:B, 3n0m:A, 3n0m:B, 3n0s:A, 3n0s:D, 3n0s:C, 3n0s:B, 3slb:A, 3slb:D, 3slb:C, 3slb:B, 3slf:A, 3slf:B
2 2nyg:A 270 262 0.5341 0.5222 0.5382 2.47e-105 2nyg:B, 2nyg:C, 2nyg:D, 2nyg:E
3 3sma:B 268 252 0.4242 0.4179 0.4444 1.65e-75 3sma:A, 3sma:C, 3sma:D
4 7q1d:D 272 262 0.2803 0.2721 0.2824 1.67e-38 7mqk:A, 7mqk:B, 7mqk:C, 7mqk:D, 7mql:A, 7mql:B, 7mql:C, 7mql:D, 7mqm:A, 7mqm:B, 7mqm:C, 7mqm:D, 7q0q:A, 7q0q:B, 7q10:A, 7q1d:A, 7q1d:B, 7q1d:C, 7q1x:A
5 5ht0:C 261 266 0.3068 0.3103 0.3045 1.68e-31 5ht0:A, 5ht0:B, 5ht0:D, 5ht0:E, 5ht0:F, 7kes:A, 7kes:B, 6mn0:A, 6mn0:B, 6mn0:C, 6mn0:F, 6mn0:D, 6mn0:E, 6mn1:A, 6mn1:B, 6mn2:A, 6mn2:B
6 6mn5:D 260 239 0.2652 0.2692 0.2929 1.17e-29 6mn3:A, 6mn3:B, 6mn4:A, 6mn4:B, 6mn4:C, 6mn4:D, 6mn4:E, 6mn4:F, 6mn5:A, 6mn5:B, 6mn5:C, 6mn5:E, 6mn5:F
7 6bc2:A 268 270 0.2917 0.2873 0.2852 1.42e-29 6bbz:A, 6bc3:A, 6bc4:A, 6bc5:A, 6bc7:A, 6np2:A, 6np3:A, 6np4:A, 6np5:A, 6nti:A, 6ntj:A, 6o5u:A
8 6mb6:A 268 253 0.2727 0.2687 0.2846 1.75e-21 6mb4:B, 6mb5:A, 6mb6:C, 6mb7:A, 6mb9:A, 6mb9:B, 6mb9:D, 6mb9:C
9 4rww:A 113 35 0.0455 0.1062 0.3429 1.0 4rww:B, 4rww:C
10 8s9x:A 770 38 0.0492 0.0169 0.3421 1.2 8s9t:A, 8s9u:A, 8s9v:A
11 5aec:A 364 52 0.0644 0.0467 0.3269 3.9 5aec:B, 4uwm:A, 4uwm:B
12 1pft:A 50 23 0.0379 0.2000 0.4348 5.4
13 6xyw:Az 82 53 0.0682 0.2195 0.3396 7.0
14 7r6r:A 167 25 0.0417 0.0659 0.4400 8.3 7tz1:A
15 4rv9:A 419 53 0.0530 0.0334 0.2642 9.5 4rvd:A, 4rvf:A, 4rvg:A, 4rvh:A
16 8ul7:A 363 51 0.0568 0.0413 0.2941 9.6 8ule:A, 8um0:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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