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BioLiP
>protein
MNASTITLHVPQRSKIAGRMDFFQMVSGALLILFLWAHMMLVSSVILSPSLMNGIAWFFEATYMAQIGGPAVFVLMVVHF
ILAARKMPFKQDEWKTFRVHACMLHHKDTTMWVVQVISAIFILVLGAVHMFVVLTDLPITAAKSAARLQSGWLYLYLVLL
PLAELHVGVGFYRIGVKYGFVGRNKRKWFQKTENLMMIGFITIGLLTLVRFM

The query sequence (length=212) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5xmj:C 212 212 1.0000 1.0000 1.0000 4.78e-156 5xmj:G, 5xmj:K, 5xmj:O
2 2bs2:F 254 215 0.3443 0.2874 0.3395 2.42e-31 2bs2:C, 2bs3:F, 2bs3:C, 2bs4:F, 2bs4:C, 1e7p:C, 1e7p:F, 1e7p:I, 1e7p:L, 1qlb:C, 1qlb:F
3 7s5f:B 309 36 0.0708 0.0485 0.4167 0.72 7s5f:A, 7s5f:C, 7s5f:D
4 1v1a:A 301 21 0.0613 0.0432 0.6190 2.8 1v1a:B, 1v1b:A, 1v1b:D, 1v1b:B, 1v1b:C
5 5v3u:A 131 65 0.0896 0.1450 0.2923 3.7 5v3t:A, 5v3t:B, 5v3u:B, 5v3v:A, 5v3v:B
6 4uur:A 124 27 0.0566 0.0968 0.4444 4.5 4uur:B
7 6znq:B 711 55 0.0613 0.0183 0.2364 7.8 6znp:B
8 6znp:A 748 55 0.0613 0.0174 0.2364 7.8 6znq:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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