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BioLiP
>protein
MLTIHVDQDKCQGHARCKALAPELFDLDDYGNAHEKGDGVVPADLIDKAWLAKSNCPENAIDITED

The query sequence (length=66) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4ov1:A 66 66 1.0000 1.0000 1.0000 7.27e-45 4id8:A
2 4dhv:B 66 62 0.3636 0.3636 0.3871 1.55e-08 4dhv:A, 3pni:A, 3pni:B, 1siz:A, 1siz:C, 1sj1:A, 1sj1:B, 2z8q:A, 2z8q:B
3 8amq:A 464 64 0.3636 0.0517 0.3750 2.88e-07 8amo:A, 8ckn:A
4 8amp:A 65 62 0.3333 0.3385 0.3548 3.61e-04
5 1rof:A 60 64 0.3182 0.3500 0.3281 0.001 1vjw:A
6 1dwl:A 59 59 0.3030 0.3390 0.3390 0.031
7 1yxh:A 119 49 0.2121 0.1176 0.2857 0.37
8 1iqz:A 81 66 0.3182 0.2593 0.3182 1.0 1ir0:A, 1wtf:A, 1wtf:B, 1wtf:C, 1wtf:D, 7yl8:A
9 1eje:A 192 39 0.1667 0.0573 0.2821 1.4
10 2wq5:A 119 50 0.1970 0.1092 0.2600 2.2 1poa:A, 1pob:A, 1pob:B
11 2b96:A 123 53 0.2273 0.1220 0.2830 2.4 2bax:A, 2bch:A, 2bd1:A, 2bd1:B, 1bp2:A, 1bpq:A, 2bpp:A, 3bp2:A, 4bp2:A, 1c74:A, 1ceh:A, 1fdk:A, 1g4i:A, 1gh4:A, 1irb:A, 1kvw:A, 1kvx:A, 1kvy:A, 1mks:A, 1mkt:A, 1mku:A, 1mkv:A, 1o2e:A, 1o3w:A, 1une:A, 1vkq:A, 1vl9:A, 2zp4:A
12 1jwq:A 179 37 0.2121 0.0782 0.3784 3.0
13 2ivf:B 337 17 0.1212 0.0237 0.4706 3.2
14 1k8c:B 319 18 0.1818 0.0376 0.6667 3.2 1k8c:A, 1k8c:C, 1k8c:D, 1mi3:A, 1mi3:B, 1mi3:C, 1mi3:D, 1r38:A, 1r38:B, 1r38:C, 1r38:D, 1sm9:A, 1sm9:B, 1sm9:C, 1sm9:D, 1ye4:A, 1ye4:B, 1ye4:C, 1ye4:D, 1ye6:A, 1ye6:B, 1ye6:C, 1ye6:D, 1z9a:A, 1z9a:B, 1z9a:C, 1z9a:D
15 1dax:A 64 25 0.1515 0.1562 0.4000 3.8 1dfd:A, 1fxr:A, 1fxr:B
16 7nhk:0 495 14 0.1364 0.0182 0.6429 3.9
17 3gci:A 119 49 0.2121 0.1176 0.2857 4.3 3jq5:A, 3jql:A, 3jti:A, 1ln8:A, 1mf4:A, 3nju:A, 3osh:A, 1oxr:A, 1psh:A, 1psh:B, 1psh:C, 3q4y:A, 1sz8:A, 1t37:A, 1td7:A, 1yxl:A, 1zm6:A
18 2rd4:B 119 48 0.1970 0.1092 0.2708 6.1 1s6b:B
19 8bot:A 3528 23 0.1515 0.0028 0.4348 7.5
20 7nfc:A 3562 23 0.1515 0.0028 0.4348 7.5 8bh3:S, 8bh3:A, 8bhv:A, 8bhv:F, 8bhy:A, 8bhy:S, 8bot:F, 8bot:S, 7nfc:F
21 7k1j:A 3584 23 0.1515 0.0028 0.4348 7.5 7k19:A
22 7nfe:A 3585 23 0.1515 0.0028 0.4348 7.5
23 7k1k:A 3604 23 0.1515 0.0028 0.4348 7.5 7k1b:A
24 7k1n:A 3634 23 0.1515 0.0028 0.4348 7.5 7z88:A
25 5y3r:C 3636 23 0.1515 0.0028 0.4348 7.5
26 7k17:B 3645 23 0.1515 0.0027 0.4348 7.5 7k17:A
27 7otm:A 3656 23 0.1515 0.0027 0.4348 7.5 7otp:A, 7otv:A, 7otw:A, 7oty:A
28 8ez9:L 3662 23 0.1515 0.0027 0.4348 7.5 8ez9:C
29 7k0y:A 3669 23 0.1515 0.0027 0.4348 7.5
30 7z87:A 3689 23 0.1515 0.0027 0.4348 7.5
31 6zha:A 3707 23 0.1515 0.0027 0.4348 7.5 6zh8:A
32 8eza:L 3720 23 0.1515 0.0027 0.4348 7.5 8eza:C, 7lt3:C, 7lt3:L
33 8ezb:C 3724 23 0.1515 0.0027 0.4348 7.5 8ezb:L
34 6zhe:F 3731 23 0.1515 0.0027 0.4348 7.5
35 7sud:A 3740 23 0.1515 0.0027 0.4348 7.5
36 6zhe:A 3768 23 0.1515 0.0027 0.4348 7.5
37 7su3:A 3802 23 0.1515 0.0026 0.4348 7.5
38 7sgl:A 3852 23 0.1515 0.0026 0.4348 7.5
39 4f8b:B 145 45 0.1818 0.0828 0.2667 7.8 4f8b:A, 4f8b:C, 4f8b:D, 4f8b:E, 4fgc:A, 4fgc:B, 4fgc:C, 4fgc:D, 4fgc:E, 5udg:A, 5udg:D, 5udg:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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