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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNEADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSRNYENQ
EGRRVFVTEVVCDSVQFLE

The query sequence (length=99) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8gw5:A 99 99 0.9798 0.9798 0.9798 2.19e-65 7ym1:A
2 6bhx:C 102 99 0.8081 0.7843 0.8081 1.70e-53 6bhx:A, 6bhx:B
3 7dep:B 102 104 0.8384 0.8137 0.7981 2.29e-52
4 3vdy:A 101 104 0.5455 0.5347 0.5192 1.91e-32 3vdy:B
5 2vw9:A 108 106 0.4040 0.3704 0.3774 1.25e-19 2vw9:B
6 1eqq:B 120 100 0.3535 0.2917 0.3500 1.52e-16 1eqq:A, 1eyg:A, 1eyg:B, 1eyg:C, 1eyg:D
7 5odn:D 106 97 0.3636 0.3396 0.3711 1.56e-16 5odn:F, 5odn:G, 5odn:B, 5odn:C, 5odn:A, 5odn:E, 5odn:H
8 3a5u:A 118 100 0.4141 0.3475 0.4100 9.62e-16 3a5u:B
9 6irq:C 104 95 0.3434 0.3269 0.3579 3.15e-14 6irq:A, 6irq:B, 6irq:D, 6jdg:C, 6jdg:A, 6jdg:B, 6jdg:D, 7vum:A, 7vum:C, 5yun:B, 5yun:A, 5yun:D
10 5odp:G 100 80 0.2828 0.2800 0.3500 4.60e-11 5odp:A
11 3ulp:C 116 99 0.3131 0.2672 0.3131 1.84e-09 3ulp:A, 3ulp:B, 3ulp:D
12 3udg:C 214 76 0.2525 0.1168 0.3289 2.60e-08 3udg:B, 3udg:A
13 3udg:C 214 85 0.2525 0.1168 0.2941 0.001 3udg:B, 3udg:A
14 6rup:A 111 105 0.3030 0.2703 0.2857 1.24e-06 6rup:B, 8uzt:A, 8uzt:C, 8uzt:D
15 8uzt:B 100 101 0.3030 0.3000 0.2970 4.10e-06
16 2ccz:A 121 107 0.2828 0.2314 0.2617 0.002 2ccz:B, 1v1q:A, 1v1q:B
17 2ex8:A 456 42 0.1616 0.0351 0.3810 0.84 2ex6:A, 2ex9:A, 2exa:A, 2exb:A
18 1odh:A 157 46 0.1414 0.0892 0.3043 0.86
19 4hyj:A 236 35 0.1313 0.0551 0.3714 1.00 4hyj:B
20 5l3w:A 297 32 0.1414 0.0471 0.4375 8.6 5l3s:B, 5l3s:D, 5l3s:F, 5l3s:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218