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BioLiP
>protein
MLIRRLKDARLRAGISQEKLGVLAGIDEASASARMNQYEKGKHAPDFEMANRLAKVLKIPVSYLYTPEDDLAQIILTWNE
LNEQERKRINFYI

The query sequence (length=93) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4jqd:E 97 93 1.0000 0.9588 1.0000 1.75e-65 4jcx:A, 4jcx:B, 4jcy:A, 4jcy:B, 4jqd:F, 4jqd:A, 4jqd:B
2 4utu:A 229 65 0.2473 0.1004 0.3538 0.019 4utu:B, 4utw:A, 4utw:B, 4utw:C, 4utw:D
3 5ghg:B 433 54 0.1828 0.0393 0.3148 0.69 5ghf:A
4 6knb:B 1120 41 0.1720 0.0143 0.3902 1.4 6knc:B
5 5f55:A 705 85 0.2366 0.0312 0.2588 2.1 5f54:A, 5f56:A, 6lrd:A
6 8ur2:B 99 42 0.1720 0.1616 0.3810 2.4
7 2bvf:A 453 68 0.2258 0.0464 0.3088 4.4 2bvf:B, 2bvg:A, 2bvg:B, 2bvg:C, 2bvg:D, 2bvh:A, 2bvh:B, 2bvh:C, 2bvh:D
8 4ryk:A 295 67 0.1720 0.0542 0.2388 4.9
9 7mq8:LU 445 53 0.1828 0.0382 0.3208 5.3 7mq9:LU, 7mqa:LU
10 7bxq:A 399 26 0.1183 0.0276 0.4231 5.7 7bxq:B, 7bxr:A, 7bxr:B, 7bxs:A, 7bxs:B
11 1y07:C 124 71 0.2043 0.1532 0.2676 6.4 1y07:A, 1y07:B, 1y07:D
12 8w7g:A 390 45 0.1505 0.0359 0.3111 6.9
13 3geh:A 442 58 0.2151 0.0452 0.3448 7.1
14 3zyy:X 628 56 0.1828 0.0271 0.3036 8.0 4c1n:J, 4c1n:I, 4c1n:K, 4c1n:X, 3zyy:Y
15 7xc4:A 127 21 0.1075 0.0787 0.4762 9.4 7xc4:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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