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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MLILKGTKTVDLSKDELTEIIGQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNV
VFVIAAAESLPFELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIKKRGLPLLSK
AYFLSEQYKAELSNSGFRIDDVKELDNEYVKQFNSLWAKRLAFGRKRSFFRVSGHVSKH

The query sequence (length=219) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3mte:A 219 219 1.0000 1.0000 1.0000 6.66e-161 3mte:B, 4ox9:Y, 3p2e:A, 3p2e:B, 3p2k:A, 3p2k:B, 3p2k:C, 3p2k:D, 3pb3:A, 3pb3:B
2 5bw4:B 224 208 0.2922 0.2857 0.3077 4.01e-35 5bw4:A, 5d1n:A
3 3mq2:A 215 205 0.2740 0.2791 0.2927 7.44e-22 3mq2:B
4 7nzi:A 207 98 0.1142 0.1208 0.2551 0.29 2fca:A, 2fca:B, 7nyb:A, 7nyb:B, 7nzi:B
5 2glu:A 234 64 0.0959 0.0897 0.3281 0.43 2glu:B
6 1o7l:B 256 96 0.1187 0.1016 0.2708 2.2 1h9r:A, 1h9r:B, 1h9s:A, 1h9s:B, 1o7l:A, 1o7l:C, 1o7l:D
7 2avn:A 247 86 0.1096 0.0972 0.2791 3.4 2avn:B
8 2enx:A 310 51 0.0685 0.0484 0.2941 3.5 2enx:B
9 8gym:v1 442 32 0.0502 0.0249 0.3438 4.1 8b6f:AD, 8bqs:AD, 8gym:V1, 8gzu:v1, 8gzu:V1, 7tgh:V1
10 2xva:A 199 86 0.1005 0.1106 0.2558 5.8 2xva:B, 2xva:C, 2xva:D, 2xvm:A, 2xvm:B
11 1npd:B 288 88 0.1142 0.0868 0.2841 7.9 1npd:A, 1o9b:A, 1o9b:B, 3t4e:A, 3t4e:B, 1vi2:A, 1vi2:B
12 4y0e:H 308 43 0.0594 0.0422 0.3023 9.0 4y0e:A, 4y0e:B, 4y0e:C, 4y0e:D, 4y0e:E, 4y0e:F, 4y0e:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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