Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MLESKLINHIATQFLDGEKDGLDSQTPLFELNIVDSAAIFDLVDFLRQESKVSIGMQEIHPANFATVQSMVALVQRLKAH
PEQGGAALE

The query sequence (length=89) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5jdx:A 89 89 1.0000 1.0000 1.0000 2.21e-61 7thn:E
2 2n5h:A 90 64 0.2584 0.2556 0.3594 3.67e-06 2n5i:A, 6o6e:E
3 5nyw:J 235 50 0.1910 0.0723 0.3400 0.24
4 6uo8:A 689 47 0.1573 0.0203 0.2979 0.58 7c7q:A, 7c7s:A, 7ca3:A, 7cum:A, 7eb2:C, 4mqf:A, 4mr7:A, 4mr8:A, 4mr9:A, 4mrm:A, 4ms1:A, 4ms3:A, 4ms4:A, 6uo9:A, 6w2x:A, 6w2y:A, 6w2y:B, 6wiv:A
5 3nzp:B 591 65 0.2360 0.0355 0.3231 0.70 3nzp:A
6 6tc9:A 259 58 0.1685 0.0579 0.2586 6.9 6tc6:A, 6tc6:C, 6tc9:C
7 7d58:E 210 59 0.2022 0.0857 0.3051 8.4 8a3y:E, 8a40:E, 7ae1:E, 7ae3:E, 7aea:E, 7b0y:E, 8b3d:E, 8b3f:E, 7dn3:E, 6exv:E, 7fji:E, 7fjj:E, 6gmh:E, 6gml:E, 8gxq:PE, 8iue:E, 8iuh:E, 5iy7:E, 5iy8:E, 5iy9:E, 5iyc:E, 5iyd:E, 8oeu:E, 8oev:E, 8oew:E, 8of0:E, 5oik:E, 7okx:E, 7oky:E, 7ol0:E, 7oo3:E, 7oob:E, 7oop:E, 7opc:E, 7opd:E, 8p4a:E, 8p4b:E, 8p4f:E, 7pks:E, 8rbx:E, 8s51:E, 8s52:E, 8s54:E, 8s5n:E, 6ted:E, 8uhd:E, 7und:E, 8w8e:E, 8w8f:E, 8wak:s, 8wal:s, 8wan:s, 8wao:s, 8wap:s, 8waq:s, 8war:s, 8was:s, 8wat:s, 8wau:s, 8wav:s, 8waw:s, 8wax:s, 8way:s, 8waz:s, 8wb0:s
8 7cyx:A 363 33 0.1798 0.0441 0.4848 8.8 7cyx:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218