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BioLiP
>protein
MLEGKVKWFNSEKGFGFIEVEGQDDVFVHFSAIQGEGFKTLEEGQAVSFEIVEGNRGPQAANVTKEA

The query sequence (length=67) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2es2:A 67 67 1.0000 1.0000 1.0000 3.73e-43 3pf4:B, 3pf5:B, 3pf5:A
2 1c9o:A 66 65 0.8209 0.8333 0.8462 6.56e-35 1c9o:B, 2hax:A, 2hax:B
3 7ot5:B 66 64 0.5672 0.5758 0.5938 2.48e-21
4 6a6j:A 90 66 0.4328 0.3222 0.4394 2.12e-12 6a6j:C, 6a6l:A, 6ktc:A, 6kug:A, 6lmr:A, 5yts:A, 5ytt:A, 5ytv:A, 5ytx:A
5 7f3i:A 93 66 0.4179 0.3011 0.4242 1.15e-11 7f3i:C, 7f3i:E, 7f3j:A, 7f3j:C, 7f3j:E, 7f3j:G, 7f3k:A, 7f3l:A
6 4a75:A 89 69 0.4030 0.3034 0.3913 2.24e-10 4a75:C, 4a75:E, 4a75:G, 4a76:A, 4a76:G, 4a76:C, 4a76:E, 4alp:A, 4alp:D
7 5udz:A 139 69 0.4030 0.1942 0.3913 3.90e-10 8ops:B, 8opt:B, 8ost:B, 3trz:A, 3trz:B, 3trz:C, 3trz:D, 3trz:E, 3trz:F, 3ts0:A, 3ts0:B, 3ts2:A, 3ts2:B, 5udz:B
8 7oii:B 39 37 0.3433 0.5897 0.6216 1.78e-09
9 2ix1:A 643 26 0.2090 0.0218 0.5385 0.12 2id0:A, 2id0:B, 2id0:C, 2id0:D, 2ix0:A
10 7zhh:A 219 61 0.3582 0.1096 0.3934 0.12
11 2uvp:C 186 32 0.1791 0.0645 0.3750 1.8 2uvp:B
12 1z7m:B 318 22 0.1940 0.0409 0.5909 2.3 1z7m:D
13 4v6w:CB 414 40 0.2239 0.0362 0.3750 3.6 6xu6:CB, 6xu7:CB, 6xu8:CB
14 2ia4:B 278 16 0.1343 0.0324 0.5625 3.8 2ia4:A
15 8ovo:A 503 16 0.1343 0.0179 0.5625 4.2 8ovo:B, 8ovp:A, 8ovp:B, 2vha:A, 2vha:B
16 2ohf:A 327 32 0.1791 0.0367 0.3750 4.9
17 1xzq:A 449 22 0.1642 0.0245 0.5000 5.8 1xzq:B
18 2cb1:A 404 14 0.1493 0.0248 0.7143 5.9
19 3vyl:A 297 20 0.1194 0.0269 0.4000 9.5 3vyl:B, 3vyl:C, 3vyl:D, 3vyl:E, 3vyl:F, 3vyl:G, 3vyl:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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