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BioLiP
>protein
MKYCKFCCKAVTGVKLIHVPKCAIKRKLWEQSLGCSLGENSQICDTHFNDSQWKAAKGQTFKRRRLNADAVPSK

The query sequence (length=74) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3kde:C 74 74 1.0000 1.0000 1.0000 9.43e-52
2 8c3a:z 179 22 0.1486 0.0615 0.5000 1.1 8c3a:BM, 8cq7:z, 8cq7:BM, 8cqw:z, 8cqw:BM, 8cre:z, 8cre:BM, 8oeq:z, 8oeq:BM, 7pzy:z, 7q08:z, 7q0f:z, 7q0p:z, 7q0r:z, 8q5i:z
3 5it7:RR 188 22 0.1486 0.0585 0.5000 1.8 6uz7:AR
4 1qor:A 326 27 0.1486 0.0337 0.4074 2.4 1qor:B
5 4wnx:A 429 25 0.1351 0.0233 0.4000 4.2
6 8jcu:3 765 26 0.1351 0.0131 0.3846 5.0 6b7h:A, 5cnk:A, 5cnm:A, 8jcv:3, 8jcw:3, 8jcx:3, 8jcy:3, 8jcz:3, 8jd0:3, 8jd1:3, 8jd2:3, 8jd3:3, 3sm9:A, 8tr0:A, 7wih:A, 7wih:B, 4xar:A
7 8dqv:B 322 32 0.1757 0.0404 0.4062 5.1 8dqv:D, 7utd:B, 7utd:D, 7utd:F, 7utd:H, 7utd:J, 7utd:L, 7utd:N, 7utd:P, 7uur:D, 7uur:G, 7uus:B, 7uus:D, 7uus:F, 7uus:H, 7uus:J, 7uus:L, 7uus:N, 7uus:P
8 1r9j:B 671 24 0.1216 0.0134 0.3750 7.6 1r9j:A
9 3qdf:A 252 27 0.1351 0.0397 0.3704 9.4
10 8ro0:O 342 29 0.1216 0.0263 0.3103 9.7 8ro1:O

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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