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BioLiP
>protein
MKRTELDMYDDIFAVLERFPNVHNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRDDIEDVTIHVE
PLGNVE

The query sequence (length=86) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6vda:A 86 86 1.0000 1.0000 1.0000 3.51e-58
2 2qfi:A 286 71 0.2326 0.0699 0.2817 2.09e-05 3h90:A, 3h90:B, 3h90:C, 3h90:D, 2qfi:B
3 3byr:A 89 59 0.2209 0.2135 0.3220 6.59e-05
4 6h5k:A 91 69 0.2442 0.2308 0.3043 6.12e-04 6g55:A, 6h5m:A, 6h5u:B, 6h5u:A, 6h5u:C, 6h87:A, 5hsp:A
5 8f6k:B 287 63 0.2326 0.0697 0.3175 0.001 8f6e:A, 8f6e:B, 8f6f:A, 8f6f:B, 8f6h:A, 8f6h:B, 8f6i:B, 8f6i:A, 8f6j:B, 8f6j:A, 8f6k:A, 8f6k:C, 8f6k:D, 7kzz:B, 7kzz:A, 5vrf:B, 5vrf:A
6 7wtt:K 1022 50 0.1628 0.0137 0.2800 1.0 7wtu:K, 7wtv:K, 7wtw:K, 7wtx:K, 7wtz:K, 7wu0:K
7 5ce3:B 598 44 0.1628 0.0234 0.3182 1.3 5ce3:D
8 5aa5:G 561 68 0.1977 0.0303 0.2500 2.4 5aa5:C, 5aa5:E, 5aa5:K, 5aa5:I, 5aa5:L
9 6yet:A 104 42 0.1744 0.1442 0.3571 2.7
10 2ynm:C 417 41 0.1744 0.0360 0.3659 3.9
11 7adr:E 466 71 0.2093 0.0386 0.2535 5.2 7adr:B, 7ady:B, 7ady:E, 7aiz:B, 7aiz:E, 6fea:B, 6fea:E, 5n6y:B, 5n6y:E
12 6rxt:UA 839 76 0.2326 0.0238 0.2632 7.1 5oql:A, 6rxu:UA, 6rxv:UA, 6rxx:UA, 6rxy:UA, 6rxz:UA

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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