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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MKQFEIVIEPIQTEQYREFTINEYQGAVVVFTGHVREWTKGVKTEYLEYEAYIPMAEKKLAQIGDEINEKWPGTITSIVH
RIGPLQISDIAVLIAVSSPHRKDAYRANEYAIERIKEIVPIWKKEIKWQGH

The query sequence (length=131) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2qie:A 136 136 1.0000 0.9632 0.9632 1.58e-90 2qie:E, 2qie:H, 2qie:K
2 2wp4:B 132 119 0.3435 0.3409 0.3782 1.29e-22
3 6nbe:N 186 42 0.1221 0.0860 0.3810 0.15 6nas:N, 6nbw:N
4 2d7d:A 621 58 0.1145 0.0242 0.2586 1.2 2nmv:A, 3v4r:B, 3v4r:A
5 1zun:B 394 48 0.1298 0.0431 0.3542 1.5
6 2fdc:A 505 58 0.1069 0.0277 0.2414 2.0
7 5hrf:A 178 45 0.0916 0.0674 0.2667 3.3 7cpw:A, 7cpw:B, 8e9a:A, 8e9a:B, 5hr9:A, 5hr9:B, 5hrb:A, 5hrd:A, 5hrd:B, 5hrd:C, 5hrd:D, 5hre:A, 5hrf:B, 5hrg:A, 5hrg:B, 5hrh:A, 5hrh:B, 5hri:A, 5hri:B, 5hrk:A, 5hrk:B, 5hrl:A, 5hrl:B, 8ild:A, 8ild:B, 8ile:B, 8ile:A, 8ilf:B, 8ilf:A, 8ilg:A, 8ilg:B, 8ilh:B, 8ilh:A, 8ilh:C, 8ilh:D, 8ili:A, 8ili:B, 8ili:C, 8ili:D, 2m2u:A, 2m2w:A, 5xm8:A, 5xm8:B, 5xm8:C, 5xm8:D, 5xm9:A, 5xm9:B, 5xm9:C, 5xm9:D, 5xma:A, 5xma:B
8 2gbx:D 170 40 0.1069 0.0824 0.3500 4.1
9 4xup:A 330 115 0.2366 0.0939 0.2696 5.3 4xun:A, 4xun:B, 4xun:C, 4xuo:A, 4xuo:B, 4xup:B, 4xup:C, 4xup:D, 4xup:E, 4xup:F, 4xuq:A, 4xuq:B, 4xuq:C, 4xur:A, 4xur:B, 4xur:C, 4xut:A, 4xut:B, 4xut:C
10 3ayx:A 595 42 0.1069 0.0235 0.3333 7.2 3ayx:C, 3ayz:A, 3ayz:C, 5y34:A, 5y34:C
11 3o5b:A 479 39 0.0840 0.0230 0.2821 9.3 3o5b:B, 3o80:A, 3o8m:A
12 5thm:A 520 34 0.0840 0.0212 0.3235 9.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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